Variant report
| Variant | rs59635494 |
|---|---|
| Chromosome Location | chr12:33133078-33133079 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:33132215..33134574-chr12:33135484..33138415,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10450694 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1500058 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1500059 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1500060 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58488828 | 1.00[ASN][1000 genomes] |
| rs58913371 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59809318 | 1.00[ASN][1000 genomes] |
| rs59840429 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60932249 | 1.00[ASN][1000 genomes] |
| rs61198905 | 1.00[ASN][1000 genomes] |
| rs61505130 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66873708 | 1.00[ASN][1000 genomes] |
| rs73307642 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73307667 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73309603 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530421 | chr12:32825335-33465991 | Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054440 | chr12:32872999-33150460 | Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 3 | nsv832367 | chr12:33063644-33298967 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv1039909 | chr12:33132909-33244419 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv1053849 | chr12:33132909-33279169 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:33131600-33136200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
