Variant report

Variant	rs66873708
Chromosome Location	chr12:33138619-33138620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10450694	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500058	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500059	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500060	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58488828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58913371	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59635494	1.00[ASN][1000 genomes]
rs59809318	1.00[ASN][1000 genomes]
rs59840429	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60932249	1.00[ASN][1000 genomes]
rs61198905	1.00[ASN][1000 genomes]
rs61505130	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73307616	0.85[AFR][1000 genomes]
rs73307642	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73307667	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309603	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1039909	chr12:33132909-33244419	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1053849	chr12:33132909-33279169	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33136800-33138800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:33137000-33141600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr12:33137000-33142200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:33137200-33141400	Weak transcription	Placenta	Placenta
5	chr12:33137200-33141600	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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