Variant report

Variant	rs59636068
Chromosome Location	chr15:40710151-40710152
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40709951..40712517-chr15:40713358..40716210,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55904487	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57094441	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60397708	1.00[AMR][1000 genomes]
rs7164303	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74011146	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74011152	1.00[AMR][1000 genomes]
rs74011153	1.00[AMR][1000 genomes]
rs74013054	1.00[AMR][1000 genomes]
rs74013056	1.00[AMR][1000 genomes]
rs8040294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8041445	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40698600-40712400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:40699000-40714000	Weak transcription	Small Intestine	intestine
3	chr15:40699600-40710800	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:40699600-40710800	Strong transcription	Primary T cells from cord blood	blood
5	chr15:40699600-40711000	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:40699600-40711000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:40699600-40711000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:40699600-40711200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:40699600-40712400	Weak transcription	Right Atrium	heart
10	chr15:40699600-40714000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:40699800-40710800	Strong transcription	NHLF	lung
12	chr15:40699800-40711000	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr15:40699800-40711000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:40699800-40711000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:40699800-40711000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:40699800-40711000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:40699800-40711000	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr15:40699800-40711000	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:40699800-40711000	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr15:40699800-40711000	Strong transcription	Osteobl	bone
21	chr15:40699800-40711400	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr15:40699800-40712400	Strong transcription	Fetal Stomach	stomach
23	chr15:40700000-40710600	Strong transcription	HSMM	muscle
24	chr15:40700000-40710800	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:40700000-40710800	Strong transcription	Fetal Thymus	thymus
26	chr15:40700000-40711000	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr15:40700000-40711000	Strong transcription	Left Ventricle	heart
28	chr15:40700000-40711000	Strong transcription	Lung	lung
29	chr15:40700000-40711400	Strong transcription	Fetal Muscle Leg	muscle
30	chr15:40700000-40711800	Strong transcription	Thymus	Thymus
31	chr15:40700000-40712200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:40700000-40712600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:40700200-40710800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:40700200-40711000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:40700200-40711000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:40700200-40711000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr15:40700200-40711000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:40700200-40711000	Strong transcription	Ovary	ovary
39	chr15:40700200-40711200	Strong transcription	Fetal Muscle Trunk	muscle
40	chr15:40700200-40711400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:40700200-40711400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr15:40700200-40712600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:40700400-40710600	Strong transcription	Brain Substantia Nigra	brain
44	chr15:40700400-40711000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:40700400-40711000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:40700400-40711000	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr15:40700400-40711000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr15:40700400-40711000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:40700400-40711000	Strong transcription	Brain Hippocampus Middle	brain
50	chr15:40700400-40711000	Strong transcription	Colon Smooth Muscle	Colon

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