Variant report

Variant	rs74013056
Chromosome Location	chr15:40617573-40617574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40614221..40619136-chr15:40629898..40635011,9	K562	blood:
2	chr15:40616209..40618065-chr15:40641977..40644316,2	MCF-7	breast:
3	chr15:40616336..40620318-chr15:40620739..40624439,7	MCF-7	breast:
4	chr15:40613279..40619250-chr15:40625286..40632667,13	MCF-7	breast:
5	chr15:40599147..40601689-chr15:40614013..40619011,4	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHGR1-1	chr15:40617417-40617689	ENSG00000259330.1
2	lnc-PHGR1-1	chr15:40616681-40618914	NONHSAT041825
3	lnc-PHGR1-1	chr15:40616696-40617689	NONHSAT041826
4	lnc-PHGR1-1	chr15:40617141-40618903	l_1150_chr15:40617140-40621361_brain

No data

Variant related genes	Relation type
ENSG00000137841	Chromatin interaction
ENSG00000233041	Chromatin interaction
ENSG00000252714	Chromatin interaction
ENSG00000188549	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55904487	1.00[AMR][1000 genomes]
rs57094441	1.00[AMR][1000 genomes]
rs59636068	1.00[AMR][1000 genomes]
rs60397708	1.00[AMR][1000 genomes]
rs7164303	1.00[AMR][1000 genomes]
rs74011146	1.00[AMR][1000 genomes]
rs74011152	1.00[AMR][1000 genomes]
rs74011153	1.00[AMR][1000 genomes]
rs74013054	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040294	1.00[AMR][1000 genomes]
rs8041445	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv510660	chr15:40552906-40721883	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	esv1850798	chr15:40560607-40622191	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv827305	chr15:40596162-40625922	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3438791	chr15:40615285-40617833	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40614800-40618200	Active TSS	Colon Smooth Muscle	Colon
2	chr15:40614800-40618400	Active TSS	Aorta	Aorta
3	chr15:40615200-40617800	Active TSS	Right Atrium	heart
4	chr15:40615400-40617600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:40615400-40617600	Active TSS	Left Ventricle	heart
6	chr15:40615400-40618000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:40615400-40618400	Active TSS	Right Ventricle	heart
8	chr15:40615600-40617800	Active TSS	Ovary	ovary
9	chr15:40615800-40618000	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr15:40616400-40618200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:40616400-40618800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr15:40616600-40617600	Flanking Active TSS	Colonic Mucosa	Colon
13	chr15:40616600-40617600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
14	chr15:40616600-40617600	Flanking Active TSS	Placenta	Placenta
15	chr15:40616600-40617800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:40616600-40618000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr15:40616800-40617600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:40616800-40617600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr15:40616800-40617600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr15:40616800-40617600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:40616800-40617600	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr15:40616800-40617600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
23	chr15:40616800-40617600	Flanking Active TSS	Psoas Muscle	Psoas
24	chr15:40616800-40617800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:40616800-40618000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
26	chr15:40616800-40618000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:40616800-40618000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
28	chr15:40616800-40618200	Flanking Active TSS	HUVEC	blood vessel
29	chr15:40616800-40618400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr15:40616800-40618400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr15:40617000-40617600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
32	chr15:40617000-40617600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr15:40617000-40617600	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr15:40617000-40617600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr15:40617000-40617600	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr15:40617000-40617600	Flanking Active TSS	Hela-S3	cervix
37	chr15:40617000-40617600	Flanking Active TSS	NH-A	brain
38	chr15:40617000-40617600	Flanking Active TSS	NHDF-Ad	bronchial
39	chr15:40617000-40617600	Flanking Active TSS	NHEK	skin
40	chr15:40617000-40617800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
41	chr15:40617000-40617800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:40617000-40617800	Flanking Active TSS	Brain Cingulate Gyrus	brain
43	chr15:40617000-40617800	Flanking Active TSS	Brain Substantia Nigra	brain
44	chr15:40617000-40617800	Flanking Active TSS	NHLF	lung
45	chr15:40617000-40618000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
46	chr15:40617000-40618000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
47	chr15:40617000-40618000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr15:40617000-40618000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr15:40617000-40618200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:40617000-40618200	Flanking Active TSS	Brain Hippocampus Middle	brain

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