Variant report

Variant	rs5964890
Chromosome Location	chrX:64191370-64191371
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10126240	0.95[YRI][hapmap]
rs11093854	0.91[YRI][hapmap]
rs12387643	0.86[YRI][hapmap]
rs12389797	0.95[YRI][hapmap]
rs1932206	0.91[YRI][hapmap]
rs5964404	0.96[YRI][hapmap]
rs5964406	1.00[YRI][hapmap]
rs5964889	0.96[YRI][hapmap]
rs7064626	0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830378	chrX:63523802-64234414	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv3431143	chrX:64153980-64192703	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a
4	esv3447048	chrX:64153980-64196277	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv916714	chrX:64178342-64589821	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64183600-64195200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chrX:64184400-64194800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chrX:64184600-64191400	Weak transcription	Primary hematopoietic stem cells	blood
4	chrX:64184600-64191400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chrX:64185000-64191800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chrX:64185000-64194400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chrX:64185600-64191600	Weak transcription	Dnd41	blood
8	chrX:64186400-64191600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chrX:64187600-64195200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chrX:64188400-64194600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chrX:64189000-64195000	Weak transcription	HSMMtube	muscle
12	chrX:64189800-64191600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chrX:64189800-64195000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chrX:64190000-64191400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chrX:64190200-64194800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chrX:64190400-64191800	Strong transcription	Ovary	ovary
17	chrX:64190600-64192400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chrX:64190600-64192600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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