Variant report

Variant	rs5964406
Chromosome Location	chrX:64198605-64198606
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10126240	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.88[MKK][hapmap];0.95[YRI][hapmap]
rs11093854	0.91[YRI][hapmap]
rs12008701	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs12387643	0.93[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[YRI][hapmap]
rs12389797	0.85[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap]
rs16989570	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs1932206	0.85[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[YRI][hapmap]
rs2167023	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5964404	0.95[YRI][hapmap]
rs5964408	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5964889	0.95[YRI][hapmap]
rs5964890	1.00[YRI][hapmap]
rs5964893	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5964897	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs7064626	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830378	chrX:63523802-64234414	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv916714	chrX:64178342-64589821	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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