Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10126240	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs12008701	0.91[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs12014990	1.00[YRI][hapmap]
rs12387643	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12389797	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16989570	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1932206	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2167023	0.91[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs41326649	1.00[MEX][hapmap]
rs5964406	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5964408	0.91[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap]
rs5964893	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6418382	1.00[MEX][hapmap]
rs6418383	1.00[MEX][hapmap]
rs6524946	1.00[MEX][hapmap]
rs6524947	1.00[MEX][hapmap]
rs6524950	1.00[YRI][hapmap]
rs6524951	1.00[YRI][hapmap]
rs6653206	1.00[MEX][hapmap]
rs7055125	1.00[MEX][hapmap]
rs7055159	1.00[MEX][hapmap]
rs7059867	1.00[YRI][hapmap]
rs7876526	1.00[MEX][hapmap]
rs7877430	1.00[MEX][hapmap]
rs7879555	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv916714	chrX:64178342-64589821	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64239000-64246800	Weak transcription	Colon Smooth Muscle	Colon

Quick Search: