Variant report

Variant	rs59650797
Chromosome Location	chr1:155283467-155283468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:155283389-155283629	ECC-1	luminal epithelium:	n/a	n/a
2	POLR2A	chr1:155282904-155283686	ECC-1	luminal epithelium:	n/a	n/a
3	POLR2A	chr1:155282874-155283626	K562	blood:	n/a	n/a
4	POLR2A	chr1:155282894-155283520	PFSK-1	brain:	n/a	n/a
5	POLR2A	chr1:155283173-155283664	MCF-7	breast:	n/a	n/a
6	POLR2A	chr1:155282769-155283685	SK-N-MC	brain:	n/a	n/a
7	POLR2A	chr1:155283189-155283549	K562	blood:	n/a	n/a
8	POLR2A	chr1:155283286-155283558	PANC-1	pancreas:	n/a	n/a
9	POLR2A	chr1:155283326-155283554	K562	blood:	n/a	n/a
10	POLR2A	chr1:155276996-155283922	HepG2	liver:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155264765..155268361-chr1:155281187..155284828,3	K562	blood:
2	chr1:155246251..155249792-chr1:155281813..155284527,3	K562	blood:
3	chr1:155276713..155281137-chr1:155281789..155284748,5	MCF-7	breast:
4	chr1:155232261..155234786-chr1:155281674..155283762,2	K562	blood:

No data

Variant related genes	Relation type
FDPS	TF binding region
ENSG00000160752	Chromatin interaction
ENSG00000176444	Chromatin interaction
ENSG00000143630	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11465203	1.00[AMR][1000 genomes]
rs2070679	1.00[AMR][1000 genomes]
rs6672663	1.00[AMR][1000 genomes]
rs6683706	1.00[AMR][1000 genomes]
rs6690002	1.00[AMR][1000 genomes]
rs7519564	1.00[AMR][1000 genomes]
rs7527209	1.00[AMR][1000 genomes]
rs7529556	1.00[AMR][1000 genomes]
rs7531890	1.00[AMR][1000 genomes]
rs7536194	1.00[AMR][1000 genomes]
rs7554397	1.00[AMR][1000 genomes]
rs8177979	1.00[AMR][1000 genomes]
rs8177997	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
2	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
3	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
4	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
5	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
6	nsv831636	chr1:155219223-155444864	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155278400-155283600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:155279200-155290400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:155279600-155284200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:155279800-155290400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:155280000-155285200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:155280000-155286800	Weak transcription	Brain Anterior Caudate	brain
7	chr1:155280000-155287200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:155280000-155287800	Weak transcription	Brain Angular Gyrus	brain
9	chr1:155280000-155290000	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:155280000-155290200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:155280000-155290200	Weak transcription	Right Atrium	heart
12	chr1:155280000-155290400	Weak transcription	Psoas Muscle	Psoas
13	chr1:155280200-155283600	Strong transcription	A549	lung
14	chr1:155280200-155285000	Strong transcription	Fetal Intestine Small	intestine
15	chr1:155280200-155288200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:155280200-155289800	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr1:155280200-155289800	Strong transcription	Fetal Stomach	stomach
18	chr1:155280200-155290000	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:155280200-155290400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr1:155280200-155290400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:155280400-155285200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr1:155280400-155285200	Strong transcription	Thymus	Thymus
23	chr1:155280600-155283600	Strong transcription	Primary T cells from cord blood	blood
24	chr1:155280600-155283600	Strong transcription	Osteobl	bone
25	chr1:155280600-155283800	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr1:155280600-155284000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:155280600-155285000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr1:155280600-155285200	Strong transcription	Esophagus	oesophagus
29	chr1:155280600-155285400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr1:155280600-155289800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr1:155280600-155289800	Weak transcription	Fetal Brain Male	brain
32	chr1:155280600-155290200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr1:155280600-155290200	Weak transcription	Brain Substantia Nigra	brain
34	chr1:155280800-155284200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr1:155280800-155285000	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr1:155280800-155285000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr1:155280800-155285000	Strong transcription	Stomach Smooth Muscle	stomach
38	chr1:155280800-155290000	Strong transcription	Fetal Thymus	thymus
39	chr1:155280800-155290600	Weak transcription	Small Intestine	intestine
40	chr1:155281200-155285000	Strong transcription	Adipose Nuclei	Adipose
41	chr1:155281200-155285200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:155281200-155285200	Strong transcription	Lung	lung
43	chr1:155281200-155286000	Strong transcription	Liver	Liver
44	chr1:155281200-155289200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr1:155281400-155284400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr1:155281400-155285000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr1:155281400-155285000	Genic enhancers	HepG2	liver
48	chr1:155281400-155285200	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr1:155281400-155285200	Strong transcription	Duodenum Mucosa	Duodenum
50	chr1:155281400-155288000	Weak transcription	Brain Cingulate Gyrus	brain

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