Variant report

Variant	rs5965118
Chromosome Location	chrX:65460400-65460401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1068538	0.89[YRI][hapmap]
rs1090752	0.85[YRI][hapmap]
rs1090842	0.85[YRI][hapmap]
rs1091486	0.84[YRI][hapmap]
rs1264216	0.84[YRI][hapmap]
rs2054179	0.86[YRI][hapmap]
rs4827365	0.86[YRI][hapmap]
rs708968	0.89[YRI][hapmap]
rs708969	0.89[YRI][hapmap]
rs806608	0.89[YRI][hapmap]
rs806609	0.85[YRI][hapmap]
rs806610	0.89[YRI][hapmap]
rs809363	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	nsv916393	chrX:65269672-65521616	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3350331	chrX:65287003-65495627	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv870364	chrX:65459411-65504985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65437600-65466400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chrX:65446800-65468800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chrX:65448200-65462200	Weak transcription	Fetal Intestine Large	intestine
4	chrX:65450200-65468000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chrX:65456400-65465800	Weak transcription	Duodenum Mucosa	Duodenum
6	chrX:65456400-65468600	Weak transcription	K562	blood
7	chrX:65458600-65460800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chrX:65459400-65465800	Weak transcription	Fetal Intestine Small	intestine
9	chrX:65459600-65479800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chrX:65460000-65486200	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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