Variant report

Variant	rs1068538
Chromosome Location	chrX:65462140-65462141
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1011526	0.86[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs1028348	0.92[MEX][hapmap]
rs1068536	1.00[CEU][hapmap]
rs1068537	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs1090752	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs1090842	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs1091486	0.92[ASW][hapmap];0.86[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap]
rs12395548	0.85[CEU][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap]
rs1264212	0.86[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs1264216	0.84[ASW][hapmap];0.86[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];0.95[YRI][hapmap]
rs1264218	0.86[CEU][hapmap]
rs1325561	0.85[MEX][hapmap]
rs1415297	0.85[CEU][hapmap];0.91[GIH][hapmap];0.86[TSI][hapmap]
rs1456803	1.00[CEU][hapmap]
rs1456804	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs1456806	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap]
rs17301659	0.85[CEU][hapmap]
rs1989028	0.86[CEU][hapmap]
rs2054179	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs2198868	1.00[CEU][hapmap]
rs2198869	1.00[CEU][hapmap]
rs2206203	0.86[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs4827365	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs4827449	0.85[MEX][hapmap]
rs585069	0.85[MEX][hapmap]
rs586789	0.85[MEX][hapmap]
rs587657	0.85[MEX][hapmap]
rs5918587	0.85[MEX][hapmap]
rs5918594	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs5918974	0.85[MEX][hapmap]
rs5919024	1.00[CEU][hapmap]
rs5919069	0.85[CEU][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap]
rs5964495	0.86[CEU][hapmap]
rs5964499	0.86[CEU][hapmap]
rs5964500	0.86[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs5965105	0.86[CEU][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs5965106	0.86[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap]
rs5965110	0.86[CEU][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap]
rs5965118	0.89[YRI][hapmap]
rs606886	0.85[MEX][hapmap]
rs651494	1.00[CEU][hapmap]
rs6624844	0.85[MEX][hapmap]
rs6624875	0.84[ASW][hapmap];0.86[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs6624876	0.84[CEU][hapmap]
rs670546	0.85[MEX][hapmap]
rs699863	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs7054364	0.86[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs7062799	0.85[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap]
rs707298	1.00[CEU][hapmap]
rs707302	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs708966	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs708968	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs708969	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs760866	0.86[CEU][hapmap]
rs760867	0.85[MEX][hapmap]
rs7891437	0.86[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs806537	0.91[CEU][hapmap]
rs806538	1.00[CEU][hapmap]
rs806607	0.86[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs806608	0.92[ASW][hapmap];0.86[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap]
rs806609	0.86[CEU][hapmap];0.95[YRI][hapmap]
rs806610	0.86[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap]
rs809363	0.92[ASW][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	nsv916393	chrX:65269672-65521616	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3350331	chrX:65287003-65495627	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv870364	chrX:65459411-65504985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65437600-65466400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chrX:65446800-65468800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chrX:65448200-65462200	Weak transcription	Fetal Intestine Large	intestine
4	chrX:65450200-65468000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chrX:65456400-65465800	Weak transcription	Duodenum Mucosa	Duodenum
6	chrX:65456400-65468600	Weak transcription	K562	blood
7	chrX:65459400-65465800	Weak transcription	Fetal Intestine Small	intestine
8	chrX:65459600-65479800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chrX:65460000-65486200	Weak transcription	Rectal Smooth Muscle	rectum

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