Variant report

Variant	rs4827449
Chromosome Location	chrX:65299723-65299724
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:65243612..65246458-chrX:65299366..65301234,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1011526	0.86[MEX][hapmap];1.00[YRI][hapmap]
rs1028348	0.89[CEU][hapmap];0.93[MEX][hapmap]
rs1068536	1.00[YRI][hapmap]
rs1068537	1.00[ASW][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap]
rs1068538	0.85[MEX][hapmap]
rs1091486	0.86[MEX][hapmap]
rs1264212	0.86[MEX][hapmap]
rs1264216	0.86[MEX][hapmap]
rs1325561	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap]
rs1456803	1.00[YRI][hapmap]
rs1456804	1.00[ASW][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap]
rs1456806	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs1989028	1.00[YRI][hapmap]
rs2198868	1.00[YRI][hapmap]
rs2198869	1.00[YRI][hapmap]
rs2206203	1.00[ASW][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap]
rs3848897	1.00[ASW][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap]
rs3848900	0.93[MEX][hapmap];0.84[TSI][hapmap]
rs3848901	1.00[ASW][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs3903921	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap]
rs3903922	1.00[YRI][hapmap]
rs4145625	1.00[CEU][hapmap]
rs582787	0.88[CEU][hapmap];0.90[GIH][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs585069	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs586789	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs587657	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs5918579	1.00[CEU][hapmap]
rs5918587	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5918594	0.83[ASW][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap]
rs5918974	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5918975	1.00[CEU][hapmap]
rs5918977	1.00[CEU][hapmap]
rs5919024	1.00[YRI][hapmap]
rs5964480	0.86[MEX][hapmap]
rs5964482	0.86[MEX][hapmap]
rs5964483	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs5964486	0.93[MEX][hapmap];0.84[TSI][hapmap]
rs5964487	1.00[ASW][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap]
rs5964488	1.00[ASW][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs5964500	1.00[ASW][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap]
rs5965077	0.86[MEX][hapmap]
rs5965083	0.89[CEU][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs5965105	1.00[ASW][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs5965106	0.86[MEX][hapmap]
rs606886	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs614506	1.00[CEU][hapmap]
rs6624844	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs6624875	0.86[MEX][hapmap]
rs670546	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs699863	1.00[ASW][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap]
rs7054364	0.86[MEX][hapmap]
rs7062799	0.86[MEX][hapmap]
rs707298	1.00[YRI][hapmap]
rs707302	1.00[ASW][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap]
rs708966	1.00[ASW][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap]
rs708968	0.86[MEX][hapmap]
rs708969	0.85[MEX][hapmap]
rs760867	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs7891437	1.00[ASW][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap]
rs806538	1.00[YRI][hapmap]
rs806607	1.00[ASW][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap]
rs806608	0.86[MEX][hapmap]
rs809363	0.86[MEX][hapmap]
rs942844	1.00[CEU][hapmap]
rs9633155	1.00[ASW][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv916393	chrX:65269672-65521616	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3350331	chrX:65287003-65495627	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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