Variant report

Variant	rs942844
Chromosome Location	chrX:65329887-65329888
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:65329020..65331623-chrX:65649142..65651331,2	K562	blood:
2	chrX:65237020..65239672-chrX:65328238..65330239,2	K562	blood:
3	chrX:64814840..64816180-chrX:65329824..65330870,4	MCF-7	breast:
4	chrX:65240910..65246566-chrX:65326289..65333249,10	K562	blood:
5	chrX:65236991..65237860-chrX:65329797..65330639,2	MCF-7	breast:
6	chrX:65240178..65246904-chrX:65328062..65335184,15	K562	blood:
7	chrX:64814976..64815918-chrX:65329748..65330459,2	MCF-7	breast:
8	chrX:65329265..65332441-chrX:65332484..65335533,3	K562	blood:
9	chrX:65246809..65249334-chrX:65328622..65332718,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1028348	0.89[CEU][hapmap]
rs1325561	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3903921	0.89[CEU][hapmap]
rs4145625	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4827449	1.00[CEU][hapmap]
rs582787	0.88[CEU][hapmap]
rs585069	1.00[CEU][hapmap]
rs586789	1.00[CEU][hapmap]
rs587657	1.00[CEU][hapmap]
rs5918579	1.00[CEU][hapmap]
rs5918587	1.00[CEU][hapmap]
rs5918974	1.00[CEU][hapmap]
rs5918975	1.00[CEU][hapmap]
rs5918977	1.00[CEU][hapmap]
rs5965083	0.89[CEU][hapmap]
rs606886	1.00[CEU][hapmap]
rs614506	1.00[CEU][hapmap]
rs6624844	1.00[CEU][hapmap]
rs670546	1.00[CEU][hapmap]
rs760867	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv916393	chrX:65269672-65521616	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3350331	chrX:65287003-65495627	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65328000-65330000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chrX:65328400-65330000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chrX:65328600-65330000	Enhancers	Primary T cells from cord blood	blood
4	chrX:65328800-65330200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chrX:65329800-65330200	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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