Variant report

Variant	rs760867
Chromosome Location	chrX:65380283-65380284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:65380158..65381781-chrX:65387272..65389321,2	K562	blood:
2	chrX:65316511..65319355-chrX:65380255..65382217,2	K562	blood:
3	chrX:65368714..65372325-chrX:65378540..65381956,3	K562	blood:
4	chrX:65378723..65380466-chrX:65382585..65384384,2	K562	blood:
5	chrX:65376360..65378316-chrX:65378507..65380407,2	K562	blood:

Variant related genes	Relation type
ENSG00000089472	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1011526	0.86[MEX][hapmap];0.80[MKK][hapmap]
rs1028348	0.89[CEU][hapmap];0.93[MEX][hapmap]
rs1068537	0.91[ASW][hapmap];0.86[MEX][hapmap]
rs1068538	0.85[MEX][hapmap]
rs1091486	0.86[MEX][hapmap]
rs1264212	0.86[MEX][hapmap]
rs1264216	0.86[MEX][hapmap]
rs1325561	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1456804	0.91[ASW][hapmap];0.86[MEX][hapmap]
rs1456806	0.91[ASW][hapmap]
rs2206203	0.91[ASW][hapmap];0.86[MEX][hapmap]
rs3848897	0.91[ASW][hapmap];0.86[MEX][hapmap]
rs3848900	0.93[MEX][hapmap];0.84[TSI][hapmap]
rs3848901	0.91[ASW][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap]
rs3903921	0.91[ASW][hapmap];0.89[CEU][hapmap];0.93[MEX][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap]
rs4145625	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4827449	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs582787	0.88[CEU][hapmap];0.90[GIH][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs585069	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs586789	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs587657	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs5918579	1.00[CEU][hapmap]
rs5918587	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5918594	0.86[MEX][hapmap]
rs5918974	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5918975	1.00[CEU][hapmap]
rs5918977	1.00[CEU][hapmap]
rs5964480	0.86[MEX][hapmap]
rs5964482	0.86[MEX][hapmap]
rs5964483	0.91[ASW][hapmap];0.86[MEX][hapmap]
rs5964486	0.93[MEX][hapmap];0.84[TSI][hapmap]
rs5964487	0.91[ASW][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap]
rs5964488	0.90[ASW][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs5964500	0.91[ASW][hapmap];0.86[MEX][hapmap]
rs5965077	0.86[MEX][hapmap]
rs5965083	0.89[CEU][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs5965105	0.91[ASW][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap]
rs5965106	0.86[MEX][hapmap]
rs606886	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs614506	1.00[CEU][hapmap]
rs6624844	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs6624875	0.86[MEX][hapmap]
rs670546	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs699863	0.91[ASW][hapmap];0.86[MEX][hapmap]
rs7054364	0.86[MEX][hapmap]
rs7062799	0.86[MEX][hapmap]
rs707302	0.91[ASW][hapmap];0.86[MEX][hapmap]
rs708966	0.91[ASW][hapmap];0.86[MEX][hapmap]
rs708968	0.86[MEX][hapmap]
rs708969	0.85[MEX][hapmap]
rs7891437	0.91[ASW][hapmap];0.86[MEX][hapmap]
rs806607	0.91[ASW][hapmap];0.86[MEX][hapmap]
rs806608	0.86[MEX][hapmap]
rs809363	0.86[MEX][hapmap]
rs942844	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9633155	0.91[ASW][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv916393	chrX:65269672-65521616	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3350331	chrX:65287003-65495627	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65379000-65384000	Weak transcription	Right Atrium	heart
2	chrX:65379600-65382400	Enhancers	Fetal Intestine Large	intestine
3	chrX:65379800-65380600	Enhancers	Fetal Intestine Small	intestine
4	chrX:65380000-65381800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chrX:65380200-65381000	Enhancers	Colonic Mucosa	Colon
6	chrX:65380200-65381800	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links