Variant report

Variant	rs5964486
Chromosome Location	chrX:65244062-65244063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:65087704..65089384-chrX:65243301..65245587,2	K562	blood:
2	chrX:65243064..65244952-chrX:65364473..65366064,2	K562	blood:
3	chrX:65242033..65245997-chrX:65279004..65281267,3	K562	blood:
4	chrX:65240178..65246904-chrX:65328062..65335184,15	K562	blood:
5	chrX:65092206..65095399-chrX:65241717..65244711,3	K562	blood:
6	chrX:65240910..65246566-chrX:65326289..65333249,10	K562	blood:
7	chrX:65242364..65244846-chrX:65352918..65355135,2	K562	blood:
8	chrX:64792367..64794528-chrX:65242170..65244371,2	K562	blood:
9	chrX:65180507..65182448-chrX:65243126..65244953,2	K562	blood:
10	chrX:65240051..65244809-chrX:65265548..65270558,7	K562	blood:
11	chrX:65240471..65245017-chrX:65410397..65415095,7	K562	blood:
12	chrX:65243263..65244897-chrX:65358555..65360267,2	K562	blood:
13	chrX:65243796..65245457-chrX:65519259..65521998,2	K562	blood:
14	chrX:65243612..65246458-chrX:65299366..65301234,2	K562	blood:
15	chrX:65242133..65244974-chrX:65410397..65412028,2	K562	blood:
16	chrX:65241884..65245967-chrX:65382303..65386067,6	K562	blood:
17	chrX:65240117..65245999-chrX:65380282..65385370,9	K562	blood:
18	chrX:65241729..65244728-chrX:65293481..65295909,2	K562	blood:
19	chrX:64963168..64964933-chrX:65242432..65244837,2	K562	blood:
20	chrX:65242414..65244457-chrX:65376517..65379290,2	K562	blood:
21	chrX:65241583..65244155-chrX:65244894..65246622,2	MCF-7	breast:
22	chrX:65093702..65097634-chrX:65241990..65245273,3	K562	blood:
23	chrX:65242323..65244933-chrX:65337169..65339466,3	K562	blood:
24	chrX:65240424..65246131-chrX:65259206..65263470,6	K562	blood:
25	chrX:64794707..64797019-chrX:65242978..65244950,2	K562	blood:
26	chrX:64893736..64896488-chrX:65243398..65245019,2	K562	blood:
27	chrX:64800580..64802340-chrX:65241292..65244415,3	K562	blood:
28	chrX:65242799..65246722-chrX:65376557..65379905,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155659	Chromatin interaction
ENSG00000089472	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1028348	0.86[MEX][hapmap]
rs1325561	0.93[MEX][hapmap]
rs3848893	0.93[YRI][hapmap]
rs3848897	1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap]
rs3848900	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs3848901	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs3903921	0.89[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs3903922	1.00[CEU][hapmap]
rs4827449	0.93[MEX][hapmap];0.84[TSI][hapmap]
rs582787	0.86[MEX][hapmap];1.00[TSI][hapmap]
rs585069	0.93[MEX][hapmap];1.00[TSI][hapmap]
rs586789	0.93[MEX][hapmap];1.00[TSI][hapmap]
rs587657	0.93[MEX][hapmap];1.00[TSI][hapmap]
rs5918587	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs5918974	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs5964466	0.86[MEX][hapmap]
rs5964480	1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap]
rs5964482	1.00[ASW][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.83[LWK][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];0.93[YRI][hapmap]
rs5964483	1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap]
rs5964487	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5964488	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5964489	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5965077	1.00[ASW][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.80[LWK][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];0.93[YRI][hapmap]
rs5965083	0.89[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.82[TSI][hapmap]
rs5965084	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs5965085	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5965087	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs606886	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs6624823	1.00[CHD][hapmap]
rs6624844	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs670546	0.93[MEX][hapmap];1.00[TSI][hapmap]
rs760867	0.93[MEX][hapmap];0.84[TSI][hapmap]
rs7882859	1.00[CHD][hapmap]
rs9306698	1.00[CEU][hapmap]
rs9633155	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs9887348	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65240800-65248600	Weak transcription	Fetal Thymus	thymus
2	chrX:65241000-65244200	Enhancers	K562	blood
3	chrX:65241200-65245000	Enhancers	Primary B cells from peripheral blood	blood
4	chrX:65242000-65250600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chrX:65242200-65248600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chrX:65242600-65248600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chrX:65243000-65245600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chrX:65243400-65248600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chrX:65243800-65245800	Weak transcription	Primary hematopoietic stem cells	blood
10	chrX:65243800-65247200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chrX:65244000-65248400	Weak transcription	Primary T cells from cord blood	blood
12	chrX:65244000-65250400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chrX:65244000-65250600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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