Variant report

Variant	rs9887348
Chromosome Location	chrX:65248939-65248940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs3848897	1.00[YRI][hapmap]
rs3848900	1.00[CEU][hapmap]
rs3848901	1.00[CEU][hapmap]
rs3903921	0.90[CEU][hapmap]
rs3903922	1.00[CEU][hapmap]
rs5964483	1.00[YRI][hapmap]
rs5964486	1.00[CEU][hapmap]
rs5964487	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5964488	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5964489	1.00[CEU][hapmap]
rs5965071	1.00[YRI][hapmap]
rs5965072	1.00[YRI][hapmap]
rs5965073	1.00[YRI][hapmap]
rs5965083	0.89[CEU][hapmap]
rs5965084	1.00[CEU][hapmap]
rs5965085	1.00[CEU][hapmap]
rs5965087	1.00[CEU][hapmap]
rs9306698	1.00[CEU][hapmap]
rs9633155	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65242000-65250600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chrX:65244000-65250400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chrX:65244000-65250600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chrX:65248400-65250400	Enhancers	K562	blood
5	chrX:65248400-65250800	Enhancers	Primary T cells from cord blood	blood
6	chrX:65248600-65249000	Enhancers	Primary B cells from peripheral blood	blood
7	chrX:65248600-65249000	Enhancers	Primary T cells fromperipheralblood	blood
8	chrX:65248600-65249000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chrX:65248600-65249000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chrX:65248600-65249000	Enhancers	Fetal Thymus	thymus
11	chrX:65248600-65249200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chrX:65248800-65249000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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