Variant report

Variant	rs3903922
Chromosome Location	chrX:65233272-65233273
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:65232330..65235202-chrX:65383574..65386164,2	K562	blood:

Variant related genes	Relation type
ENSG00000089472	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1011526	1.00[YRI][hapmap]
rs1989028	1.00[YRI][hapmap]
rs2206203	1.00[YRI][hapmap]
rs3848900	1.00[CEU][hapmap]
rs3848901	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3903921	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs4827449	1.00[YRI][hapmap]
rs5964486	1.00[CEU][hapmap]
rs5964487	1.00[CEU][hapmap]
rs5964488	1.00[CEU][hapmap]
rs5964489	1.00[CEU][hapmap]
rs5964500	1.00[YRI][hapmap]
rs5965044	1.00[YRI][hapmap]
rs5965083	0.89[CEU][hapmap]
rs5965084	1.00[CEU][hapmap]
rs5965085	1.00[CEU][hapmap]
rs5965087	1.00[CEU][hapmap]
rs5965105	1.00[YRI][hapmap]
rs7891437	1.00[YRI][hapmap]
rs9306698	1.00[CEU][hapmap]
rs9633155	1.00[CEU][hapmap]
rs9887348	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65213600-65235000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chrX:65219000-65235000	Enhancers	Primary B cells from peripheral blood	blood
3	chrX:65220600-65233800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chrX:65226200-65235000	Enhancers	Dnd41	blood
5	chrX:65227200-65233800	Weak transcription	Placenta	Placenta
6	chrX:65230600-65236600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chrX:65231200-65233800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chrX:65231200-65235200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chrX:65231400-65235000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chrX:65231400-65235200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chrX:65231400-65235400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chrX:65231400-65237600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chrX:65231600-65234000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chrX:65231800-65235400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chrX:65231800-65239000	Enhancers	Fetal Thymus	thymus
16	chrX:65231800-65244000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chrX:65232000-65233400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chrX:65232000-65235000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chrX:65232000-65235200	Flanking Active TSS	Primary B cells from cord blood	blood
20	chrX:65232000-65235200	Enhancers	Primary T cells fromperipheralblood	blood
21	chrX:65232000-65237200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chrX:65232000-65239000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chrX:65232200-65234800	Enhancers	Primary T cells from cord blood	blood
24	chrX:65232200-65237800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chrX:65232400-65234000	Flanking Active TSS	GM12878-XiMat	blood
26	chrX:65232600-65234000	Enhancers	K562	blood
27	chrX:65232800-65234000	Enhancers	Thymus	Thymus
28	chrX:65233000-65233600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chrX:65233000-65234000	Weak transcription	Adipose Nuclei	Adipose
30	chrX:65233000-65234200	Enhancers	Primary hematopoietic stem cells	blood
31	chrX:65233200-65233600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chrX:65233200-65235800	Weak transcription	Liver	Liver

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