Variant report

Variant	rs5965044
Chromosome Location	chrX:65086436-65086437
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12009586	1.00[YRI][hapmap]
rs13731	1.00[YRI][hapmap]
rs3848901	1.00[YRI][hapmap]
rs3903921	1.00[YRI][hapmap]
rs3903922	1.00[YRI][hapmap]
rs5964999	1.00[YRI][hapmap]
rs6525003	1.00[YRI][hapmap]
rs6525006	1.00[YRI][hapmap]
rs6525007	1.00[YRI][hapmap]
rs6624813	1.00[YRI][hapmap]
rs6624823	1.00[CEU][hapmap]
rs7051717	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65085000-65087000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chrX:65085000-65087400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chrX:65085200-65086600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chrX:65085200-65086800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chrX:65085200-65087000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chrX:65085200-65087400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chrX:65085600-65086800	Enhancers	GM12878-XiMat	blood
8	chrX:65085600-65087000	Enhancers	Primary T cells from cord blood	blood
9	chrX:65085600-65087000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chrX:65085800-65087000	Enhancers	Dnd41	blood
11	chrX:65085800-65087200	Enhancers	Primary B cells from peripheral blood	blood
12	chrX:65086000-65086600	Enhancers	Primary T cells fromperipheralblood	blood
13	chrX:65086000-65087000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chrX:65086000-65087000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chrX:65086200-65086600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chrX:65086200-65091600	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links