Variant report

Variant	rs6525007
Chromosome Location	chrX:64960509-64960510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:64955917..64957783-chrX:64960421..64961968,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12009586	1.00[YRI][hapmap]
rs12397033	1.00[ASW][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs1332720	1.00[YRI][hapmap]
rs13731	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs16989770	0.87[GIH][hapmap]
rs4535877	1.00[TSI][hapmap]
rs5918955	1.00[YRI][hapmap]
rs5918956	1.00[YRI][hapmap]
rs5964999	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5965003	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs5965004	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs5965006	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs5965007	0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5965030	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs5965044	1.00[YRI][hapmap]
rs6525003	1.00[YRI][hapmap]
rs6525004	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs6525006	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6624812	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs6624813	1.00[YRI][hapmap]
rs6624823	0.83[ASW][hapmap];1.00[MEX][hapmap]
rs6653221	1.00[YRI][hapmap]
rs7050592	1.00[ASW][hapmap];0.87[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7051717	1.00[ASW][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7053565	1.00[YRI][hapmap]
rs7061281	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs7887261	0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64927800-64964200	Weak transcription	Fetal Heart	heart
2	chrX:64936400-64963400	Strong transcription	Dnd41	blood
3	chrX:64940800-64962400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chrX:64940800-64964400	Weak transcription	Small Intestine	intestine
5	chrX:64943400-64963600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chrX:64943800-64963600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chrX:64944400-64962200	Strong transcription	A549	lung
8	chrX:64944400-64962600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chrX:64944400-64964200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chrX:64945000-64963600	Strong transcription	Fetal Thymus	thymus
11	chrX:64945400-64961200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chrX:64945400-64962000	Strong transcription	Osteobl	bone
13	chrX:64945400-64962400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chrX:64946600-64964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chrX:64946800-64962000	Strong transcription	Hela-S3	cervix
16	chrX:64947000-64961000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chrX:64947000-64962600	Strong transcription	Liver	Liver
18	chrX:64947200-64961000	Strong transcription	Fetal Muscle Trunk	muscle
19	chrX:64947400-64961200	Strong transcription	Thymus	Thymus
20	chrX:64947400-64962200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chrX:64947400-64962600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chrX:64947400-64963600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chrX:64947600-64961800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chrX:64947600-64962600	Strong transcription	Primary B cells from peripheral blood	blood
25	chrX:64947800-64962400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chrX:64947800-64963000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chrX:64948000-64962600	Strong transcription	Adipose Nuclei	Adipose
28	chrX:64948200-64962400	Strong transcription	Fetal Muscle Leg	muscle
29	chrX:64948400-64960600	Strong transcription	Stomach Smooth Muscle	stomach
30	chrX:64948400-64962000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chrX:64948400-64962400	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chrX:64948600-64961600	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chrX:64948600-64962400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chrX:64948600-64962600	Strong transcription	Spleen	Spleen
35	chrX:64948600-64963600	Strong transcription	NH-A	brain
36	chrX:64948600-64963800	Strong transcription	HUVEC	blood vessel
37	chrX:64948800-64961000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
38	chrX:64948800-64961200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
39	chrX:64948800-64961200	Strong transcription	Left Ventricle	heart
40	chrX:64948800-64962600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chrX:64948800-64963000	Weak transcription	Fetal Brain Female	brain
42	chrX:64949000-64961200	Strong transcription	HMEC	breast
43	chrX:64949000-64961200	Strong transcription	HSMMtube	muscle
44	chrX:64949000-64963200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chrX:64949200-64960600	Strong transcription	H1 Cell Line	embryonic stem cell
46	chrX:64949200-64961200	Strong transcription	Brain Anterior Caudate	brain
47	chrX:64949200-64961200	Strong transcription	HSMM	muscle
48	chrX:64949200-64961800	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chrX:64949400-64961000	Strong transcription	Duodenum Mucosa	Duodenum
50	chrX:64949400-64961000	Strong transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links