Variant report

Variant	rs1332720
Chromosome Location	chrX:64815536-64815537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:64814884..64815934-chrX:65205633..65206707,7	MCF-7	breast:
2	chrX:64814999..64815759-chrX:64887326..64888489,3	K562	blood:
3	chrX:64815517..64819306-chrX:64887077..64889516,3	K562	blood:
4	chrX:64815019..64815944-chrX:64923473..64924430,5	MCF-7	breast:
5	chrX:64815028..64815977-chrX:65205484..65206402,4	K562	blood:
6	chrX:64814982..64815960-chrX:64923348..64924515,13	MCF-7	breast:
7	chrX:64814998..64815846-chrX:64965425..64966443,4	MCF-7	breast:
8	chrX:64814840..64816180-chrX:65329824..65330870,4	MCF-7	breast:
9	chrX:64801922..64802435-chrX:64814969..64815693,2	MCF-7	breast:
10	chrX:64814014..64816042-chrX:64946100..64948827,2	K562	blood:
11	chrX:64815276..64815912-chrX:64942286..64943257,2	K562	blood:
12	chrX:64814191..64818207-chrX:64819444..64823049,4	K562	blood:
13	chrX:64815169..64815940-chrX:65205601..65206684,6	MCF-7	breast:
14	chrX:64815387..64817166-chrX:64818665..64820717,2	K562	blood:
15	chrX:64814976..64815918-chrX:65329748..65330459,2	MCF-7	breast:
16	chrX:64814581..64817043-chrX:64913178..64916156,2	K562	blood:
17	chrX:64815066..64815637-chrX:64946335..64947276,2	K562	blood:
18	chrX:64801724..64802475-chrX:64815090..64815751,2	K562	blood:
19	chrX:64805465..64811137-chrX:64811689..64816958,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000147065	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12009586	1.00[YRI][hapmap]
rs13731	1.00[YRI][hapmap]
rs2038284	1.00[YRI][hapmap]
rs5918955	1.00[YRI][hapmap]
rs5918956	1.00[YRI][hapmap]
rs5964442	1.00[YRI][hapmap]
rs5964999	1.00[YRI][hapmap]
rs6525003	1.00[YRI][hapmap]
rs6525006	1.00[YRI][hapmap]
rs6525007	1.00[YRI][hapmap]
rs6624813	1.00[YRI][hapmap]
rs6653221	1.00[YRI][hapmap]
rs7050592	1.00[YRI][hapmap]
rs7051717	1.00[YRI][hapmap]
rs7053565	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv3409088	chrX:64739187-64876813	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64808000-64820200	Weak transcription	Right Atrium	heart
2	chrX:64808800-64815800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chrX:64809000-64815600	Weak transcription	Rectal Smooth Muscle	rectum
4	chrX:64809400-64815600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chrX:64809600-64820200	Weak transcription	Spleen	Spleen
6	chrX:64812000-64822400	Weak transcription	Ovary	ovary
7	chrX:64813200-64815600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chrX:64813200-64823800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chrX:64813600-64816200	Weak transcription	Right Ventricle	heart
10	chrX:64813600-64818800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chrX:64813800-64815600	Enhancers	GM12878-XiMat	blood
12	chrX:64813800-64816600	Enhancers	K562	blood
13	chrX:64814400-64815600	Weak transcription	Primary T cells from cord blood	blood
14	chrX:64814400-64816800	Enhancers	Fetal Thymus	thymus
15	chrX:64814800-64815600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chrX:64814800-64818000	Enhancers	Primary T cells fromperipheralblood	blood
17	chrX:64814800-64819000	Enhancers	Primary hematopoietic stem cells	blood
18	chrX:64814800-64823000	Enhancers	Primary B cells from peripheral blood	blood
19	chrX:64815000-64815600	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chrX:64815000-64815600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chrX:64815000-64815800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chrX:64815000-64815800	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chrX:64815000-64815800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chrX:64815000-64815800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chrX:64815000-64815800	Enhancers	Placenta	Placenta
26	chrX:64815000-64816000	Enhancers	Fetal Lung	lung
27	chrX:64815000-64816400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chrX:64815000-64816600	Enhancers	Adipose Nuclei	Adipose
29	chrX:64815000-64816800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chrX:64815000-64817200	Enhancers	HUVEC	blood vessel
31	chrX:64815000-64818000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chrX:64815000-64818200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chrX:64815000-64818400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chrX:64815200-64815600	Enhancers	Dnd41	blood
35	chrX:64815200-64815800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chrX:64815200-64815800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chrX:64815200-64816000	Enhancers	Stomach Mucosa	stomach
38	chrX:64815200-64816400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chrX:64815200-64816800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chrX:64815200-64816800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chrX:64815200-64816800	Enhancers	HMEC	breast
42	chrX:64815400-64815600	Enhancers	Hela-S3	cervix
43	chrX:64815400-64815600	Enhancers	Monocytes-CD14+_RO01746	blood
44	chrX:64815400-64815800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chrX:64815400-64815800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chrX:64815400-64815800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chrX:64815400-64816400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
48	chrX:64815400-64816800	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links