Variant report

Variant	rs12009586
Chromosome Location	chrX:64926328-64926329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:64920040..64922907-chrX:64924418..64927399,4	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1332720	1.00[YRI][hapmap]
rs13731	1.00[YRI][hapmap]
rs5918955	1.00[YRI][hapmap]
rs5918956	1.00[YRI][hapmap]
rs5964999	1.00[YRI][hapmap]
rs5965044	1.00[YRI][hapmap]
rs6525003	1.00[YRI][hapmap]
rs6525006	1.00[YRI][hapmap]
rs6525007	1.00[YRI][hapmap]
rs6624813	1.00[YRI][hapmap]
rs6653221	1.00[YRI][hapmap]
rs7050592	1.00[YRI][hapmap]
rs7051717	1.00[YRI][hapmap]
rs7053565	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv869900	chrX:64885384-64942167	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64908400-64926800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chrX:64917400-64927800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chrX:64918400-64927600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chrX:64918600-64927000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chrX:64918600-64936600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chrX:64918800-64927800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chrX:64919000-64926800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chrX:64919000-64931600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chrX:64919400-64926800	Enhancers	Primary B cells from cord blood	blood
10	chrX:64920000-64928400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chrX:64920600-64928200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chrX:64921200-64926600	Genic enhancers	Primary T cells fromperipheralblood	blood
13	chrX:64921200-64927000	Enhancers	HUVEC	blood vessel
14	chrX:64922000-64928200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chrX:64922400-64927000	Enhancers	Muscle Satellite Cultured Cells	--
16	chrX:64922600-64926400	Enhancers	NHEK	skin
17	chrX:64922600-64926600	Enhancers	Adipose Nuclei	Adipose
18	chrX:64922600-64927000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chrX:64922600-64927000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chrX:64922600-64927200	Enhancers	NHDF-Ad	bronchial
21	chrX:64922600-64927200	Enhancers	Osteobl	bone
22	chrX:64922600-64927800	Enhancers	HMEC	breast
23	chrX:64922800-64927600	Enhancers	Fetal Thymus	thymus
24	chrX:64922800-64927600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chrX:64922800-64927600	Enhancers	HSMM	muscle
26	chrX:64923000-64927200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chrX:64923200-64927400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chrX:64923200-64927800	Enhancers	NHLF	lung
29	chrX:64923400-64926600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chrX:64923400-64927000	Enhancers	Colon Smooth Muscle	Colon
31	chrX:64923400-64927400	Enhancers	Placenta	Placenta
32	chrX:64923400-64927800	Enhancers	Left Ventricle	heart
33	chrX:64923400-64927800	Enhancers	Right Atrium	heart
34	chrX:64924000-64927400	Enhancers	Primary T cells from cord blood	blood
35	chrX:64924000-64942000	Weak transcription	Thymus	Thymus
36	chrX:64924200-64927000	Enhancers	Primary B cells from peripheral blood	blood
37	chrX:64924200-64927400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chrX:64924200-64927600	Enhancers	Fetal Muscle Leg	muscle
39	chrX:64924400-64927200	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chrX:64924400-64927200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chrX:64924400-64927800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chrX:64924600-64927400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chrX:64924800-64926800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chrX:64924800-64927800	Enhancers	Lung	lung
45	chrX:64925000-64926600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
46	chrX:64925000-64926800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chrX:64925000-64927200	Enhancers	Duodenum Mucosa	Duodenum
48	chrX:64925000-64927600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chrX:64925200-64926400	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chrX:64925200-64926600	Enhancers	Duodenum Smooth Muscle	Duodenum

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