Variant report

Variant	rs6525003
Chromosome Location	chrX:64938139-64938140
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:64936407..64939003-chrX:64940051..64941621,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12009586	1.00[YRI][hapmap]
rs1332720	1.00[YRI][hapmap]
rs13731	1.00[YRI][hapmap]
rs5918955	1.00[YRI][hapmap]
rs5918956	1.00[YRI][hapmap]
rs5964999	1.00[YRI][hapmap]
rs5965044	1.00[YRI][hapmap]
rs6525006	1.00[YRI][hapmap]
rs6525007	1.00[YRI][hapmap]
rs6624813	1.00[YRI][hapmap]
rs6653221	1.00[YRI][hapmap]
rs7050592	1.00[YRI][hapmap]
rs7051717	1.00[YRI][hapmap]
rs7053565	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv869900	chrX:64885384-64942167	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64924000-64942000	Weak transcription	Thymus	Thymus
2	chrX:64926400-64940200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chrX:64926400-64940800	Weak transcription	Colonic Mucosa	Colon
4	chrX:64926400-64948600	Weak transcription	Fetal Lung	lung
5	chrX:64926600-64949400	Weak transcription	Esophagus	oesophagus
6	chrX:64926800-64949400	Weak transcription	Aorta	Aorta
7	chrX:64927000-64945000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chrX:64927000-64949200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chrX:64927200-64940200	Weak transcription	NHDF-Ad	bronchial
10	chrX:64927200-64940400	Weak transcription	Small Intestine	intestine
11	chrX:64927200-64945000	Weak transcription	Osteobl	bone
12	chrX:64927200-64950400	Weak transcription	Gastric	stomach
13	chrX:64927600-64948200	Weak transcription	Fetal Muscle Leg	muscle
14	chrX:64927800-64945400	Weak transcription	Brain Cingulate Gyrus	brain
15	chrX:64927800-64945800	Weak transcription	Brain Substantia Nigra	brain
16	chrX:64927800-64945800	Weak transcription	HMEC	breast
17	chrX:64927800-64946800	Weak transcription	Brain Anterior Caudate	brain
18	chrX:64927800-64964200	Weak transcription	Fetal Heart	heart
19	chrX:64931600-64941000	Weak transcription	Duodenum Mucosa	Duodenum
20	chrX:64932000-64946600	Weak transcription	Psoas Muscle	Psoas
21	chrX:64932200-64940200	Weak transcription	Colon Smooth Muscle	Colon
22	chrX:64932200-64947600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chrX:64932200-64947800	Weak transcription	Fetal Kidney	kidney
24	chrX:64932200-64949400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chrX:64932400-64948400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chrX:64933400-64940200	Weak transcription	Right Ventricle	heart
27	chrX:64933400-64950200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chrX:64934000-64941600	Weak transcription	Right Atrium	heart
29	chrX:64934200-64939200	Weak transcription	Brain Hippocampus Middle	brain
30	chrX:64934200-64946000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chrX:64935800-64942400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chrX:64936000-64942400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chrX:64936200-64946600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chrX:64936400-64938200	Strong transcription	Fetal Thymus	thymus
35	chrX:64936400-64938600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chrX:64936400-64939600	Genic enhancers	HUVEC	blood vessel
37	chrX:64936400-64939800	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chrX:64936400-64942000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chrX:64936400-64942400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chrX:64936400-64946400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chrX:64936400-64947000	Genic enhancers	Primary T cells fromperipheralblood	blood
42	chrX:64936400-64951600	Weak transcription	Fetal Intestine Large	intestine
43	chrX:64936400-64963400	Strong transcription	Dnd41	blood
44	chrX:64936600-64938200	Strong transcription	Liver	Liver
45	chrX:64936600-64938200	Strong transcription	NH-A	brain
46	chrX:64936600-64938200	Strong transcription	NHEK	skin
47	chrX:64936600-64938400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
48	chrX:64936600-64939200	Strong transcription	Adipose Nuclei	Adipose
49	chrX:64936600-64939400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chrX:64936600-64940400	Genic enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links