Variant report

Variant	rs7053565
Chromosome Location	chrX:64811942-64811943
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12009586	1.00[YRI][hapmap]
rs1332720	1.00[YRI][hapmap]
rs13731	1.00[YRI][hapmap]
rs2038284	1.00[YRI][hapmap]
rs5918955	1.00[YRI][hapmap]
rs5918956	1.00[YRI][hapmap]
rs5964442	1.00[YRI][hapmap]
rs5964999	1.00[YRI][hapmap]
rs6525003	1.00[YRI][hapmap]
rs6525006	1.00[YRI][hapmap]
rs6525007	1.00[YRI][hapmap]
rs6624813	1.00[YRI][hapmap]
rs6653221	1.00[YRI][hapmap]
rs7050592	1.00[YRI][hapmap]
rs7051717	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv3409088	chrX:64739187-64876813	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64802400-64815000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chrX:64808000-64820200	Weak transcription	Right Atrium	heart
3	chrX:64808800-64815400	Weak transcription	Hela-S3	cervix
4	chrX:64808800-64815800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chrX:64809000-64812000	Enhancers	Ovary	ovary
6	chrX:64809000-64815200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chrX:64809000-64815600	Weak transcription	Rectal Smooth Muscle	rectum
8	chrX:64809400-64815600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chrX:64809600-64813600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chrX:64809600-64815200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chrX:64809600-64820200	Weak transcription	Spleen	Spleen
12	chrX:64809800-64812000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chrX:64810200-64812000	Enhancers	K562	blood
14	chrX:64811400-64812000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chrX:64811400-64812000	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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