Variant report

Variant	rs5965006
Chromosome Location	chrX:64956611-64956612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:64955917..64957783-chrX:64960421..64961968,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12011733	1.00[YRI][hapmap]
rs12397033	1.00[MEX][hapmap]
rs16989770	0.87[GIH][hapmap]
rs4535877	0.82[YRI][hapmap]
rs5964999	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs5965003	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs5965004	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs5965007	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs5965030	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6525004	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs6525006	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6525007	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6624812	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs6624823	0.91[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap]
rs7050592	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs7051717	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs7061281	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs7887261	0.87[GIH][hapmap]
rs7891236	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64927800-64964200	Weak transcription	Fetal Heart	heart
2	chrX:64936400-64963400	Strong transcription	Dnd41	blood
3	chrX:64940000-64957200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chrX:64940800-64962400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chrX:64940800-64964400	Weak transcription	Small Intestine	intestine
6	chrX:64943400-64963600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chrX:64943600-64956800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chrX:64943800-64957000	Weak transcription	Brain Germinal Matrix	brain
9	chrX:64943800-64963600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chrX:64944400-64962200	Strong transcription	A549	lung
11	chrX:64944400-64962600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chrX:64944400-64964200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chrX:64945000-64963600	Strong transcription	Fetal Thymus	thymus
14	chrX:64945400-64961200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chrX:64945400-64962000	Strong transcription	Osteobl	bone
16	chrX:64945400-64962400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chrX:64945600-64960000	Strong transcription	K562	blood
18	chrX:64946600-64964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chrX:64946800-64957800	Weak transcription	Brain Cingulate Gyrus	brain
20	chrX:64946800-64962000	Strong transcription	Hela-S3	cervix
21	chrX:64947000-64961000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chrX:64947000-64962600	Strong transcription	Liver	Liver
23	chrX:64947200-64961000	Strong transcription	Fetal Muscle Trunk	muscle
24	chrX:64947400-64957400	Strong transcription	Psoas Muscle	Psoas
25	chrX:64947400-64958800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chrX:64947400-64961200	Strong transcription	Thymus	Thymus
27	chrX:64947400-64962200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chrX:64947400-64962600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chrX:64947400-64963600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chrX:64947600-64961800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chrX:64947600-64962600	Strong transcription	Primary B cells from peripheral blood	blood
32	chrX:64947800-64960000	Weak transcription	Stomach Mucosa	stomach
33	chrX:64947800-64962400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chrX:64947800-64963000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chrX:64948000-64957000	Weak transcription	Brain Angular Gyrus	brain
36	chrX:64948000-64962600	Strong transcription	Adipose Nuclei	Adipose
37	chrX:64948200-64962400	Strong transcription	Fetal Muscle Leg	muscle
38	chrX:64948400-64960400	Strong transcription	Primary hematopoietic stem cells	blood
39	chrX:64948400-64960600	Strong transcription	Stomach Smooth Muscle	stomach
40	chrX:64948400-64962000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chrX:64948400-64962400	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chrX:64948600-64961600	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chrX:64948600-64962400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chrX:64948600-64962600	Strong transcription	Spleen	Spleen
45	chrX:64948600-64963600	Strong transcription	NH-A	brain
46	chrX:64948600-64963800	Strong transcription	HUVEC	blood vessel
47	chrX:64948800-64957600	Strong transcription	Lung	lung
48	chrX:64948800-64961000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
49	chrX:64948800-64961200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
50	chrX:64948800-64961200	Strong transcription	Left Ventricle	heart

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