Variant report

Variant	rs12011733
Chromosome Location	chrX:64888462-64888463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:64887857..64890537-chrX:64897336..64900714,4	K562	blood:
2	chrX:64888012..64889628-chrX:65380975..65383281,2	K562	blood:
3	chrX:64879856..64882769-chrX:64887639..64889777,2	K562	blood:

Variant related genes	Relation type
ENSG00000089472	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4535877	0.82[YRI][hapmap]
rs5965006	1.00[YRI][hapmap]
rs7891236	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv869900	chrX:64885384-64942167	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64886800-64888600	Active TSS	iPS-18 Cell Line	embryonic stem cell
2	chrX:64886800-64888800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
3	chrX:64886800-64889400	Active TSS	Brain Germinal Matrix	brain
4	chrX:64886800-64889600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chrX:64886800-64890200	Active TSS	Psoas Muscle	Psoas
6	chrX:64887000-64888600	Active TSS	H1 Cell Line	embryonic stem cell
7	chrX:64887000-64888600	Active TSS	Skeletal Muscle Female	skeletal muscle
8	chrX:64887000-64888800	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chrX:64887000-64888800	Active TSS	Fetal Brain Female	brain
10	chrX:64887000-64889000	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chrX:64887000-64889400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chrX:64887000-64889400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chrX:64887000-64889400	Active TSS	Brain Angular Gyrus	brain
14	chrX:64887000-64889600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chrX:64887000-64889600	Active TSS	Osteobl	bone
16	chrX:64887000-64889800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chrX:64887000-64889800	Active TSS	Fetal Lung	lung
18	chrX:64887000-64890200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chrX:64887000-64890200	Active TSS	Brain Anterior Caudate	brain
20	chrX:64887000-64890400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chrX:64887000-64890400	Active TSS	Brain Hippocampus Middle	brain
22	chrX:64887000-64891800	Active TSS	HSMM	muscle
23	chrX:64887200-64888600	Active TSS	Primary neutrophils fromperipheralblood	blood
24	chrX:64887200-64888600	Active TSS	Liver	Liver
25	chrX:64887200-64888600	ZNF genes & repeats	Fetal Stomach	stomach
26	chrX:64887200-64888600	Active TSS	Skeletal Muscle Male	skeletal muscle
27	chrX:64887200-64888600	Active TSS	K562	blood
28	chrX:64887200-64888800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chrX:64887200-64888800	Active TSS	Cortex derived primary cultured neurospheres	brain
30	chrX:64887200-64888800	Active TSS	Hela-S3	cervix
31	chrX:64887200-64889000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chrX:64887200-64889000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chrX:64887200-64889000	Active TSS	Fetal Muscle Leg	muscle
34	chrX:64887200-64889200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chrX:64887200-64889200	Active TSS	Primary T helper cells PMA-I stimulated	--
36	chrX:64887200-64889200	Active TSS	Colon Smooth Muscle	Colon
37	chrX:64887200-64889400	Active TSS	Ovary	ovary
38	chrX:64887200-64889600	Active TSS	HUES64 Cell Line	embryonic stem cell
39	chrX:64887200-64889600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chrX:64887200-64889600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chrX:64887200-64889600	Active TSS	Left Ventricle	heart
42	chrX:64887200-64889600	Active TSS	A549	lung
43	chrX:64887200-64890000	Active TSS	Rectal Mucosa Donor 29	rectum
44	chrX:64887200-64890000	Active TSS	Thymus	Thymus
45	chrX:64887200-64890200	Active TSS	NHEK	skin
46	chrX:64887200-64891000	Active TSS	Right Atrium	heart
47	chrX:64887200-64891000	Active TSS	Right Ventricle	heart
48	chrX:64887200-64891000	Active TSS	GM12878-XiMat	blood
49	chrX:64887200-64891200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chrX:64887200-64892200	Active TSS	Primary T regulatory cells fromperipheralblood	blood

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