Variant report

Variant	rs7891236
Chromosome Location	chrX:64925065-64925066
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:64920040..64922907-chrX:64924418..64927399,4	K562	blood:
2	chrX:64920019..64921891-chrX:64924418..64926295,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12011733	1.00[YRI][hapmap]
rs4535877	0.82[YRI][hapmap]
rs5965006	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv869900	chrX:64885384-64942167	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64908400-64926800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chrX:64910800-64926000	Weak transcription	Esophagus	oesophagus
3	chrX:64912200-64925200	Weak transcription	Aorta	Aorta
4	chrX:64917200-64925600	Weak transcription	Fetal Lung	lung
5	chrX:64917400-64927800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chrX:64918200-64925400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chrX:64918400-64927600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chrX:64918600-64926200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chrX:64918600-64927000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chrX:64918600-64936600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chrX:64918800-64927800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chrX:64919000-64926800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chrX:64919000-64931600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chrX:64919200-64925400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chrX:64919400-64925600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chrX:64919400-64926800	Enhancers	Primary B cells from cord blood	blood
17	chrX:64920000-64928400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chrX:64920600-64928200	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chrX:64921000-64925200	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chrX:64921000-64925400	Weak transcription	Spleen	Spleen
21	chrX:64921000-64925600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chrX:64921000-64925600	Weak transcription	Colonic Mucosa	Colon
23	chrX:64921200-64926600	Genic enhancers	Primary T cells fromperipheralblood	blood
24	chrX:64921200-64927000	Enhancers	HUVEC	blood vessel
25	chrX:64921800-64925200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chrX:64921800-64925600	Enhancers	GM12878-XiMat	blood
27	chrX:64922000-64928200	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chrX:64922400-64927000	Enhancers	Muscle Satellite Cultured Cells	--
29	chrX:64922600-64925600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chrX:64922600-64926400	Enhancers	NHEK	skin
31	chrX:64922600-64926600	Enhancers	Adipose Nuclei	Adipose
32	chrX:64922600-64927000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chrX:64922600-64927000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chrX:64922600-64927200	Enhancers	NHDF-Ad	bronchial
35	chrX:64922600-64927200	Enhancers	Osteobl	bone
36	chrX:64922600-64927800	Enhancers	HMEC	breast
37	chrX:64922800-64925600	Enhancers	NH-A	brain
38	chrX:64922800-64926000	Enhancers	Liver	Liver
39	chrX:64922800-64927600	Enhancers	Fetal Thymus	thymus
40	chrX:64922800-64927600	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chrX:64922800-64927600	Enhancers	HSMM	muscle
42	chrX:64923000-64926200	Enhancers	Primary hematopoietic stem cells	blood
43	chrX:64923000-64927200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chrX:64923200-64927400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chrX:64923200-64927800	Enhancers	NHLF	lung
46	chrX:64923400-64925400	Weak transcription	Fetal Heart	heart
47	chrX:64923400-64925600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chrX:64923400-64926600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chrX:64923400-64927000	Enhancers	Colon Smooth Muscle	Colon
50	chrX:64923400-64927400	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links