Variant report
| Variant | rs6624823 |
|---|---|
| Chromosome Location | chrX:65067485-65067486 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000207939 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs3848897 | 0.83[ASW][hapmap];1.00[CHD][hapmap] |
| rs3848900 | 1.00[CHD][hapmap] |
| rs3848901 | 0.83[ASW][hapmap] |
| rs3903921 | 0.83[ASW][hapmap] |
| rs5964480 | 1.00[CHD][hapmap] |
| rs5964482 | 1.00[CHD][hapmap] |
| rs5964483 | 0.83[ASW][hapmap];1.00[CHD][hapmap] |
| rs5964486 | 1.00[CHD][hapmap] |
| rs5964487 | 0.83[ASW][hapmap] |
| rs5964488 | 0.82[ASW][hapmap] |
| rs5964999 | 0.83[ASW][hapmap];1.00[MEX][hapmap] |
| rs5965003 | 1.00[MEX][hapmap] |
| rs5965004 | 1.00[MEX][hapmap] |
| rs5965006 | 0.91[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap] |
| rs5965007 | 1.00[MEX][hapmap] |
| rs5965030 | 1.00[MEX][hapmap] |
| rs5965044 | 1.00[CEU][hapmap] |
| rs5965077 | 1.00[CHD][hapmap] |
| rs5965083 | 1.00[CHD][hapmap] |
| rs6525004 | 1.00[MEX][hapmap] |
| rs6525006 | 0.83[ASW][hapmap];1.00[MEX][hapmap] |
| rs6525007 | 0.83[ASW][hapmap];1.00[MEX][hapmap] |
| rs6624812 | 1.00[MEX][hapmap] |
| rs7050592 | 0.83[ASW][hapmap];1.00[MEX][hapmap] |
| rs7051717 | 0.83[ASW][hapmap];1.00[MEX][hapmap] |
| rs7061281 | 1.00[MEX][hapmap] |
| rs7882859 | 1.00[CHD][hapmap] |
| rs9633155 | 0.83[ASW][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3429625 | chrX:64787230-65458721 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:65066200-65068000 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chrX:65066400-65067600 | Enhancers | HMEC | breast |
