Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chrX:65214729-65215273	K562	blood:	n/a	n/a
2	EP300	chrX:65214888-65215408	K562	blood:	n/a	n/a
3	UBTF	chrX:65215026-65215235	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chrX:64886000..64890941-chrX:65215009..65218758,4	K562	blood:
2	chrX:65093096..65094781-chrX:65214275..65217097,2	K562	blood:
3	chrX:64800992..64802512-chrX:65213916..65216484,2	K562	blood:

Variant related genes	Relation type
ENSG00000237311	TF binding region
ENSG00000147065	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1325561	0.86[MEX][hapmap]
rs3848897	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs3848900	1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap]
rs3848901	0.93[GIH][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap]
rs3903921	1.00[GIH][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs4827449	0.86[MEX][hapmap]
rs585069	0.86[MEX][hapmap]
rs586789	0.86[MEX][hapmap]
rs587657	0.84[ASW][hapmap];0.86[MEX][hapmap]
rs5918587	0.86[MEX][hapmap]
rs5918974	0.86[MEX][hapmap]
rs5964466	0.93[MEX][hapmap]
rs5964482	0.88[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5964483	0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5964486	1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap]
rs5964487	0.93[GIH][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap]
rs5964488	0.93[MEX][hapmap];0.84[TSI][hapmap]
rs5965077	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5965083	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs606886	0.92[ASW][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs6624823	1.00[CHD][hapmap]
rs6624844	0.86[MEX][hapmap]
rs670546	0.86[MEX][hapmap]
rs760867	0.86[MEX][hapmap]
rs7882859	1.00[CHD][hapmap]
rs9633155	0.93[GIH][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65208000-65221200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chrX:65208200-65218000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chrX:65209600-65218800	Weak transcription	Primary B cells from cord blood	blood
4	chrX:65209800-65217600	Weak transcription	Primary hematopoietic stem cells	blood
5	chrX:65212600-65217200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chrX:65212800-65217400	Enhancers	K562	blood
7	chrX:65213600-65220200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chrX:65213600-65235000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chrX:65213800-65219200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chrX:65213800-65225200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chrX:65214400-65218600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chrX:65214600-65215600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chrX:65214600-65215800	Enhancers	Primary B cells from peripheral blood	blood
14	chrX:65214800-65215600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chrX:65215000-65219000	Weak transcription	Primary T cells from cord blood	blood

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