Variant report

Variant	rs1325561
Chromosome Location	chrX:65329113-65329114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:65329020..65331623-chrX:65649142..65651331,2	K562	blood:
2	chrX:65237020..65239672-chrX:65328238..65330239,2	K562	blood:
3	chrX:65240910..65246566-chrX:65326289..65333249,10	K562	blood:
4	chrX:65240178..65246904-chrX:65328062..65335184,15	K562	blood:
5	chrX:65246809..65249334-chrX:65328622..65332718,3	K562	blood:

Variant related genes	Relation type
ENSG00000207939	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1011526	0.86[MEX][hapmap]
rs1028348	0.89[CEU][hapmap];0.93[MEX][hapmap]
rs1068537	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs1068538	0.85[MEX][hapmap]
rs1091486	0.86[MEX][hapmap]
rs1264212	0.86[MEX][hapmap]
rs1264216	0.86[MEX][hapmap]
rs1456804	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs1456806	1.00[ASW][hapmap]
rs2206203	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs3848897	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs3848900	0.93[MEX][hapmap]
rs3848901	1.00[ASW][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap]
rs3903921	1.00[ASW][hapmap];0.89[CEU][hapmap];0.93[MEX][hapmap];0.84[MKK][hapmap]
rs4145625	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4827449	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap]
rs582787	0.88[CEU][hapmap];0.93[MEX][hapmap]
rs585069	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs586789	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs587657	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs5918579	1.00[CEU][hapmap]
rs5918587	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs5918594	0.82[ASW][hapmap];0.86[MEX][hapmap]
rs5918974	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs5918975	1.00[CEU][hapmap]
rs5918977	1.00[CEU][hapmap]
rs5964480	0.86[MEX][hapmap]
rs5964482	0.86[MEX][hapmap]
rs5964483	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs5964486	0.93[MEX][hapmap]
rs5964487	1.00[ASW][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap]
rs5964488	1.00[ASW][hapmap];0.93[MEX][hapmap]
rs5964500	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs5965077	0.86[MEX][hapmap]
rs5965083	0.89[CEU][hapmap];0.93[MEX][hapmap]
rs5965105	1.00[ASW][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap]
rs5965106	0.86[MEX][hapmap]
rs606886	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs614506	1.00[CEU][hapmap]
rs6624844	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs6624875	0.86[MEX][hapmap]
rs670546	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs699863	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs7054364	0.86[MEX][hapmap]
rs7062799	0.86[MEX][hapmap]
rs707302	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs708966	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs708968	0.86[MEX][hapmap]
rs708969	0.85[MEX][hapmap]
rs760867	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7891437	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs806607	1.00[ASW][hapmap];0.86[MEX][hapmap]
rs806608	0.86[MEX][hapmap]
rs809363	0.86[MEX][hapmap]
rs942844	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9633155	1.00[ASW][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv916393	chrX:65269672-65521616	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3350331	chrX:65287003-65495627	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65328000-65330000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chrX:65328400-65330000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chrX:65328600-65330000	Enhancers	Primary T cells from cord blood	blood
4	chrX:65328800-65330200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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