Variant report

Variant	rs3848901
Chromosome Location	chrX:65240965-65240966
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:65239941..65242879-chrX:65333382..65336352,3	K562	blood:
2	chrX:65240178..65246904-chrX:65328062..65335184,15	K562	blood:
3	chrX:64795099..64797348-chrX:65240297..65242165,2	K562	blood:
4	chrX:65240910..65246566-chrX:65326289..65333249,10	K562	blood:
5	chrX:65143296..65149010-chrX:65240327..65243776,8	K562	blood:
6	chrX:65144258..65147834-chrX:65239369..65242773,5	K562	blood:
7	chrX:65240051..65244809-chrX:65265548..65270558,7	K562	blood:
8	chrX:65240471..65245017-chrX:65410397..65415095,7	K562	blood:
9	chrX:65240814..65243760-chrX:65271249..65273015,2	K562	blood:
10	chrX:65240117..65245999-chrX:65380282..65385370,9	K562	blood:
11	chrX:64968345..64971279-chrX:65240254..65242780,2	K562	blood:
12	chrX:65240424..65246131-chrX:65259206..65263470,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155659	Chromatin interaction
ENSG00000089472	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1011526	0.85[LWK][hapmap];1.00[YRI][hapmap]
rs1028348	0.86[MEX][hapmap]
rs1325561	1.00[ASW][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap]
rs1989028	1.00[YRI][hapmap]
rs2206203	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs3848897	1.00[ASW][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap]
rs3848900	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs3903921	1.00[ASW][hapmap];0.90[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs3903922	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4827449	1.00[ASW][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs582787	0.86[MEX][hapmap];0.92[TSI][hapmap]
rs585069	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs586789	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs587657	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs5918587	0.93[MEX][hapmap];0.83[TSI][hapmap]
rs5918974	0.93[MEX][hapmap];0.83[TSI][hapmap]
rs5964466	0.86[MEX][hapmap]
rs5964480	0.93[GIH][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap]
rs5964482	0.85[GIH][hapmap];0.93[MEX][hapmap]
rs5964483	1.00[ASW][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap]
rs5964486	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5964487	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs5964488	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5964489	1.00[CEU][hapmap]
rs5964500	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs5965044	1.00[YRI][hapmap]
rs5965077	0.93[GIH][hapmap];0.93[MEX][hapmap]
rs5965083	0.89[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5965084	1.00[CEU][hapmap]
rs5965085	1.00[CEU][hapmap]
rs5965087	1.00[CEU][hapmap]
rs5965105	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs606886	0.93[MEX][hapmap];1.00[TSI][hapmap]
rs6624823	0.83[ASW][hapmap]
rs6624844	0.93[MEX][hapmap];0.83[TSI][hapmap]
rs670546	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs760867	0.91[ASW][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap]
rs7891437	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs806607	1.00[ASW][hapmap]
rs9306698	1.00[CEU][hapmap]
rs9633155	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs9887348	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65231800-65244000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chrX:65234200-65241800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chrX:65235600-65241600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chrX:65235800-65241800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chrX:65236400-65242000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chrX:65237800-65241400	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
7	chrX:65237800-65242000	Enhancers	Primary T cells from cord blood	blood
8	chrX:65238600-65241800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chrX:65239000-65241400	Enhancers	GM12878-XiMat	blood
10	chrX:65239000-65241600	Weak transcription	Placenta	Placenta
11	chrX:65239600-65241200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chrX:65240000-65241600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chrX:65240000-65241600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chrX:65240000-65243200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chrX:65240200-65241000	Enhancers	Primary B cells from peripheral blood	blood
16	chrX:65240200-65241400	Flanking Active TSS	Primary B cells from cord blood	blood
17	chrX:65240200-65241400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chrX:65240200-65242000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chrX:65240400-65241200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chrX:65240400-65241400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chrX:65240400-65242200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chrX:65240400-65242600	Enhancers	Primary T cells fromperipheralblood	blood
23	chrX:65240400-65243400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chrX:65240600-65241200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chrX:65240800-65241000	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chrX:65240800-65241000	Flanking Active TSS	K562	blood
27	chrX:65240800-65248600	Weak transcription	Fetal Thymus	thymus

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