Variant report

Variant	rs5964466
Chromosome Location	chrX:65144981-65144982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:65099029..65100788-chrX:65144548..65146467,2	K562	blood:
2	chrX:64952788..64955471-chrX:65143936..65146195,2	K562	blood:
3	chrX:65143296..65149010-chrX:65240327..65243776,8	K562	blood:
4	chrX:65144392..65147673-chrX:65216129..65220788,7	K562	blood:
5	chrX:65120105..65122513-chrX:65142816..65145766,2	K562	blood:
6	chrX:65144528..65147266-chrX:65216905..65220788,6	K562	blood:
7	chrX:65136749..65138571-chrX:65142944..65145601,2	K562	blood:
8	chrX:64753290..64756511-chrX:65144568..65147240,3	K562	blood:
9	chrX:64964691..64967214-chrX:65143563..65145375,3	K562	blood:
10	chrX:65142972..65146034-chrX:65235370..65237820,3	K562	blood:
11	chrX:65144258..65147834-chrX:65239369..65242773,5	K562	blood:
12	chrX:64965412..64967214-chrX:65143875..65146450,2	K562	blood:
13	chrX:65144408..65148513-chrX:65228242..65230667,4	K562	blood:
14	chrX:65101609..65103511-chrX:65144703..65146983,2	K562	blood:
15	chrX:65129538..65133031-chrX:65143134..65145625,3	K562	blood:
16	chrX:65105845..65107847-chrX:65143316..65145426,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000237311	Chromatin interaction
ENSG00000001497	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16989770	0.92[ASW][hapmap];0.84[MKK][hapmap]
rs3848897	0.84[CEU][hapmap];0.93[MEX][hapmap]
rs3848900	0.86[MEX][hapmap]
rs3848901	0.86[MEX][hapmap]
rs3903921	0.86[MEX][hapmap]
rs5964480	0.93[MEX][hapmap]
rs5964482	0.93[MEX][hapmap]
rs5964483	0.93[MEX][hapmap]
rs5964486	0.86[MEX][hapmap]
rs5964487	0.86[MEX][hapmap]
rs5964488	0.86[MEX][hapmap]
rs5965071	0.84[CEU][hapmap]
rs5965077	0.84[CEU][hapmap];0.93[MEX][hapmap]
rs5965083	0.86[MEX][hapmap]
rs7887261	0.92[ASW][hapmap];0.84[MKK][hapmap]
rs9633155	0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65141000-65145200	Weak transcription	Fetal Thymus	thymus
2	chrX:65141400-65145000	Weak transcription	Primary hematopoietic stem cells	blood
3	chrX:65141600-65147000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chrX:65142400-65146000	Enhancers	Primary T cells from cord blood	blood
5	chrX:65142600-65145800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chrX:65142800-65146400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chrX:65143000-65145000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
8	chrX:65143000-65147400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chrX:65143000-65148800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chrX:65143200-65145000	Weak transcription	Primary B cells from cord blood	blood
11	chrX:65143600-65148000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chrX:65143800-65146400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chrX:65144000-65147800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chrX:65144000-65147800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chrX:65144200-65146200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chrX:65144200-65146400	Enhancers	Primary T cells fromperipheralblood	blood
17	chrX:65144200-65146400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chrX:65144400-65145000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chrX:65144400-65145600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chrX:65144400-65145800	Flanking Active TSS	K562	blood
21	chrX:65144400-65146000	ZNF genes & repeats	GM12878-XiMat	blood
22	chrX:65144400-65146200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chrX:65144400-65147000	Flanking Active TSS	Dnd41	blood
24	chrX:65144400-65147400	Enhancers	Primary B cells from peripheral blood	blood
25	chrX:65144400-65147600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chrX:65144600-65145400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chrX:65144600-65146000	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chrX:65144600-65146200	Enhancers	Placenta	Placenta
29	chrX:65144800-65145600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chrX:65144800-65145800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chrX:65144800-65145800	Enhancers	Esophagus	oesophagus
32	chrX:65144800-65146400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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