Variant report

Variant	rs5964488
Chromosome Location	chrX:65253769-65253770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:65252901..65255340-chrX:65381594..65383789,2	K562	blood:

Variant related genes	Relation type
ENSG00000089472	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1028348	0.86[MEX][hapmap]
rs1325561	1.00[ASW][hapmap];0.93[MEX][hapmap]
rs2206203	1.00[ASW][hapmap]
rs3848897	1.00[ASW][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs3848900	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs3848901	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs3903921	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs3903922	1.00[CEU][hapmap]
rs4827449	1.00[ASW][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs582787	0.86[MEX][hapmap];0.92[TSI][hapmap]
rs585069	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs586789	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs587657	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs5918587	0.93[MEX][hapmap];0.83[TSI][hapmap]
rs5918974	0.93[MEX][hapmap];0.84[TSI][hapmap]
rs5964466	0.86[MEX][hapmap]
rs5964480	0.93[MEX][hapmap];0.84[TSI][hapmap]
rs5964482	0.93[MEX][hapmap]
rs5964483	1.00[ASW][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs5964486	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5964487	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5964489	1.00[CEU][hapmap]
rs5964500	1.00[ASW][hapmap]
rs5965071	1.00[YRI][hapmap]
rs5965072	1.00[YRI][hapmap]
rs5965073	1.00[YRI][hapmap]
rs5965077	0.93[MEX][hapmap]
rs5965083	0.89[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5965084	1.00[CEU][hapmap]
rs5965085	1.00[CEU][hapmap]
rs5965087	1.00[CEU][hapmap]
rs5965105	1.00[ASW][hapmap]
rs606886	0.93[MEX][hapmap];1.00[TSI][hapmap]
rs6624823	0.82[ASW][hapmap]
rs6624844	0.93[MEX][hapmap];0.84[TSI][hapmap]
rs670546	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs699863	1.00[ASW][hapmap]
rs760867	0.90[ASW][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs7891437	1.00[ASW][hapmap]
rs806607	1.00[ASW][hapmap]
rs9306698	1.00[CEU][hapmap]
rs9633155	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9887348	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65251000-65259000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chrX:65251400-65253800	Enhancers	K562	blood
3	chrX:65252800-65255600	Weak transcription	Primary monocytes fromperipheralblood	blood

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