Variant report

Variant	rs5965087
Chromosome Location	chrX:65256236-65256237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3848893	0.82[YRI][hapmap]
rs3848900	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs3848901	1.00[CEU][hapmap]
rs3903921	0.90[CEU][hapmap]
rs3903922	1.00[CEU][hapmap]
rs5964482	0.81[YRI][hapmap]
rs5964486	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs5964487	1.00[CEU][hapmap]
rs5964488	1.00[CEU][hapmap]
rs5964489	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs5965077	0.81[YRI][hapmap]
rs5965083	0.89[CEU][hapmap]
rs5965084	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs5965085	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs9306698	1.00[CEU][hapmap]
rs9633155	1.00[CEU][hapmap]
rs9887348	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	esv3392998	chrX:65255877-65258525	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65251000-65259000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chrX:65255400-65256400	Enhancers	K562	blood
3	chrX:65255600-65256400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chrX:65256200-65256400	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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