Variant report

Variant	rs3903921
Chromosome Location	chrX:65229746-65229747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:65144408..65148513-chrX:65228242..65230667,4	K562	blood:
2	chrX:65228635..65231315-chrX:65382628..65384793,2	K562	blood:

Variant related genes	Relation type
ENSG00000089472	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1011526	1.00[YRI][hapmap]
rs1028348	0.86[MEX][hapmap]
rs1325561	1.00[ASW][hapmap];0.89[CEU][hapmap];0.93[MEX][hapmap];0.84[MKK][hapmap]
rs1989028	1.00[YRI][hapmap]
rs2206203	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs3848897	1.00[ASW][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap]
rs3848900	0.90[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs3848901	1.00[ASW][hapmap];0.90[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs3903922	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs4145625	0.89[CEU][hapmap]
rs4827449	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap]
rs582787	0.86[MEX][hapmap];0.82[TSI][hapmap]
rs585069	0.89[CEU][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap]
rs586789	0.89[CEU][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap]
rs587657	0.89[CEU][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap]
rs5918579	0.89[CEU][hapmap]
rs5918587	0.89[CEU][hapmap];0.93[MEX][hapmap]
rs5918974	0.89[CEU][hapmap];0.93[MEX][hapmap]
rs5918975	0.89[CEU][hapmap]
rs5918977	0.89[CEU][hapmap]
rs5964466	0.86[MEX][hapmap]
rs5964480	1.00[GIH][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs5964482	0.93[GIH][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap]
rs5964483	1.00[ASW][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap]
rs5964486	0.89[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs5964487	1.00[ASW][hapmap];0.90[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap]
rs5964488	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs5964489	0.90[CEU][hapmap]
rs5964500	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs5965044	1.00[YRI][hapmap]
rs5965077	1.00[GIH][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap]
rs5965083	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5965084	0.90[CEU][hapmap]
rs5965085	0.90[CEU][hapmap]
rs5965087	0.90[CEU][hapmap]
rs5965105	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs606886	0.89[CEU][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs614506	0.89[CEU][hapmap]
rs6624823	0.83[ASW][hapmap]
rs6624844	0.89[CEU][hapmap];0.93[MEX][hapmap]
rs670546	0.89[CEU][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap]
rs760867	0.91[ASW][hapmap];0.89[CEU][hapmap];0.93[MEX][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap]
rs7891437	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs806607	1.00[ASW][hapmap];0.83[LWK][hapmap]
rs9306698	0.82[CEU][hapmap]
rs942844	0.89[CEU][hapmap]
rs9633155	1.00[ASW][hapmap];0.90[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap]
rs9887348	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65213600-65235000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chrX:65219000-65235000	Enhancers	Primary B cells from peripheral blood	blood
3	chrX:65220600-65232600	Enhancers	Primary hematopoietic stem cells	blood
4	chrX:65220600-65233800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chrX:65226000-65231400	Enhancers	Primary B cells from cord blood	blood
6	chrX:65226200-65231400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chrX:65226200-65235000	Enhancers	Dnd41	blood
8	chrX:65226400-65231800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chrX:65226400-65232000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chrX:65227000-65232000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chrX:65227200-65233800	Weak transcription	Placenta	Placenta
12	chrX:65227600-65231400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chrX:65227600-65231400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chrX:65227600-65232000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chrX:65227600-65232000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chrX:65227800-65231200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chrX:65227800-65231400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chrX:65228200-65231600	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chrX:65228200-65232200	Weak transcription	Primary T cells from cord blood	blood
20	chrX:65228800-65229800	Weak transcription	GM12878-XiMat	blood
21	chrX:65228800-65231800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chrX:65229400-65229800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chrX:65229400-65229800	Enhancers	Fetal Thymus	thymus
24	chrX:65229400-65230600	Enhancers	K562	blood
25	chrX:65229400-65230600	Enhancers	Monocytes-CD14+_RO01746	blood
26	chrX:65229400-65232000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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