Variant report

Variant	rs5918977
Chromosome Location	chrX:65277344-65277345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1028348	0.89[CEU][hapmap]
rs1325561	1.00[CEU][hapmap]
rs3903921	0.89[CEU][hapmap]
rs4145625	1.00[CEU][hapmap]
rs4827449	1.00[CEU][hapmap]
rs582787	0.88[CEU][hapmap]
rs585069	1.00[CEU][hapmap]
rs586789	1.00[CEU][hapmap]
rs587657	1.00[CEU][hapmap]
rs5918579	1.00[CEU][hapmap]
rs5918587	1.00[CEU][hapmap]
rs5918974	1.00[CEU][hapmap]
rs5918975	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs5965083	0.89[CEU][hapmap]
rs606886	1.00[CEU][hapmap]
rs614506	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs6624844	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs670546	1.00[CEU][hapmap]
rs760867	1.00[CEU][hapmap]
rs942844	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv916393	chrX:65269672-65521616	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65274200-65278600	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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