Variant report

Variant	rs606886
Chromosome Location	chrX:65269173-65269174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:65259149..65264594-chrX:65265547..65269768,7	K562	blood:
2	chrX:65246401..65249158-chrX:65269138..65271685,2	K562	blood:
3	chrX:65240051..65244809-chrX:65265548..65270558,7	K562	blood:

Variant related genes	Relation type
ENSG00000155659	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1011526	0.86[MEX][hapmap]
rs1028348	0.89[CEU][hapmap];0.93[MEX][hapmap]
rs1068537	0.86[MEX][hapmap]
rs1068538	0.85[MEX][hapmap]
rs1091486	0.86[MEX][hapmap]
rs1264212	0.86[MEX][hapmap]
rs1264216	0.86[MEX][hapmap]
rs1325561	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs2206203	0.86[MEX][hapmap]
rs3848897	0.86[MEX][hapmap];0.83[TSI][hapmap]
rs3848900	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs3848901	0.93[MEX][hapmap];1.00[TSI][hapmap]
rs3903921	0.89[CEU][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs4145625	1.00[CEU][hapmap]
rs4827449	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs582787	0.88[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs585069	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.92[TSI][hapmap]
rs586789	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs587657	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap]
rs5918579	1.00[CEU][hapmap]
rs5918587	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs5918974	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs5918975	1.00[CEU][hapmap]
rs5918977	1.00[CEU][hapmap]
rs5964480	0.92[ASW][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs5964482	0.86[MEX][hapmap]
rs5964483	0.86[MEX][hapmap];0.83[TSI][hapmap]
rs5964486	0.93[MEX][hapmap];0.92[TSI][hapmap]
rs5964487	0.93[MEX][hapmap];1.00[TSI][hapmap]
rs5964488	0.93[MEX][hapmap];1.00[TSI][hapmap]
rs5964500	0.86[MEX][hapmap]
rs5965077	0.86[MEX][hapmap]
rs5965083	0.92[ASW][hapmap];0.89[CEU][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap]
rs5965105	0.86[MEX][hapmap]
rs5965106	0.86[MEX][hapmap]
rs614506	1.00[CEU][hapmap]
rs6624844	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs6624875	0.86[MEX][hapmap]
rs670546	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs699863	0.86[MEX][hapmap]
rs7054364	0.86[MEX][hapmap]
rs7062799	0.86[MEX][hapmap]
rs707302	0.86[MEX][hapmap]
rs708966	0.86[MEX][hapmap]
rs760867	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs7891437	0.86[MEX][hapmap]
rs806607	0.86[MEX][hapmap]
rs806608	0.86[MEX][hapmap]
rs809363	0.86[MEX][hapmap]
rs942844	1.00[CEU][hapmap]
rs9633155	0.93[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65265200-65274800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chrX:65267800-65269200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chrX:65267800-65269600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chrX:65268000-65269800	Weak transcription	K562	blood
5	chrX:65268000-65270000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chrX:65268000-65273600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chrX:65268200-65269400	Weak transcription	Primary B cells from cord blood	blood
8	chrX:65268200-65269800	Weak transcription	Primary B cells from peripheral blood	blood
9	chrX:65268200-65269800	Weak transcription	GM12878-XiMat	blood
10	chrX:65269000-65269400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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