Variant report

Variant	rs5965030
Chromosome Location	chrX:65013251-65013252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12387998	1.00[YRI][hapmap]
rs16989770	0.87[GIH][hapmap]
rs5964999	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs5965003	0.85[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs5965004	0.85[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap]
rs5965006	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs5965007	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs6525004	0.85[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap]
rs6525006	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6525007	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6624812	0.85[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap]
rs6624823	1.00[MEX][hapmap]
rs7050592	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs7051717	0.87[GIH][hapmap];1.00[MEX][hapmap]
rs7058831	0.82[YRI][hapmap]
rs7061281	0.85[ASW][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs7877834	1.00[YRI][hapmap]
rs7887261	0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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