Variant report

Variant	rs7058831
Chromosome Location	chrX:64899628-64899629
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:64887857..64890537-chrX:64897336..64900714,4	K562	blood:
2	chrX:64898828..64900563-chrX:64929082..64931792,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12387998	0.83[YRI][hapmap]
rs5965003	1.00[YRI][hapmap]
rs5965030	0.82[YRI][hapmap]
rs6525004	0.94[YRI][hapmap]
rs6624812	0.88[YRI][hapmap]
rs7050457	0.94[YRI][hapmap]
rs7061281	1.00[YRI][hapmap]
rs7062766	0.88[YRI][hapmap]
rs7877834	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv869900	chrX:64885384-64942167	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64888600-64901200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chrX:64889000-64911800	Weak transcription	Gastric	stomach
3	chrX:64889400-64917200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:64889800-64916600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chrX:64889800-64917000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chrX:64891800-64899800	Enhancers	NHDF-Ad	bronchial
7	chrX:64894000-64900200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chrX:64894000-64916400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chrX:64894200-64899800	Enhancers	Osteobl	bone
10	chrX:64894200-64901400	Weak transcription	Brain Angular Gyrus	brain
11	chrX:64894400-64902400	Weak transcription	Liver	Liver
12	chrX:64894400-64906400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chrX:64894600-64905000	Weak transcription	Aorta	Aorta
14	chrX:64894800-64916000	Weak transcription	Fetal Lung	lung
15	chrX:64894800-64917200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chrX:64895200-64902000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chrX:64895200-64910600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chrX:64895400-64903400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chrX:64895400-64906200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chrX:64896000-64900000	Enhancers	Brain Hippocampus Middle	brain
21	chrX:64896000-64900000	Enhancers	Fetal Muscle Leg	muscle
22	chrX:64896000-64900000	Enhancers	HMEC	breast
23	chrX:64896200-64900000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
24	chrX:64896400-64899800	Enhancers	Fetal Thymus	thymus
25	chrX:64896400-64901200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chrX:64896400-64908400	Weak transcription	Brain Substantia Nigra	brain
27	chrX:64896800-64900000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chrX:64897000-64900000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chrX:64897600-64902000	Enhancers	Right Atrium	heart
30	chrX:64897800-64900000	Enhancers	Left Ventricle	heart
31	chrX:64897800-64900000	Enhancers	Spleen	Spleen
32	chrX:64898000-64900000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chrX:64898000-64900000	Enhancers	Colon Smooth Muscle	Colon
34	chrX:64898000-64900000	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chrX:64898000-64900000	Enhancers	Stomach Mucosa	stomach
36	chrX:64898000-64903000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chrX:64898000-64906200	Genic enhancers	Dnd41	blood
38	chrX:64898200-64900000	Enhancers	Small Intestine	intestine
39	chrX:64898200-64902400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chrX:64898400-64899800	Enhancers	NHLF	lung
41	chrX:64898400-64900000	Enhancers	Psoas Muscle	Psoas
42	chrX:64898400-64900000	Enhancers	Rectal Smooth Muscle	rectum
43	chrX:64898400-64900400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chrX:64898600-64899800	Weak transcription	Pancreas	Pancrea
45	chrX:64898600-64900000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chrX:64898600-64900000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chrX:64898600-64901000	Enhancers	Primary B cells from peripheral blood	blood
48	chrX:64898600-64908400	Weak transcription	Fetal Stomach	stomach
49	chrX:64898600-64909400	Weak transcription	Esophagus	oesophagus
50	chrX:64898800-64900000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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