Variant report

Variant	rs7062766
Chromosome Location	chrX:64943679-64943680
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs5965003	0.88[YRI][hapmap]
rs6525004	0.82[YRI][hapmap]
rs6624812	1.00[YRI][hapmap]
rs7050457	0.83[YRI][hapmap]
rs7058831	0.88[YRI][hapmap]
rs7061281	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64926400-64948600	Weak transcription	Fetal Lung	lung
2	chrX:64926600-64949400	Weak transcription	Esophagus	oesophagus
3	chrX:64926800-64949400	Weak transcription	Aorta	Aorta
4	chrX:64927000-64945000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chrX:64927000-64949200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chrX:64927200-64945000	Weak transcription	Osteobl	bone
7	chrX:64927200-64950400	Weak transcription	Gastric	stomach
8	chrX:64927600-64948200	Weak transcription	Fetal Muscle Leg	muscle
9	chrX:64927800-64945400	Weak transcription	Brain Cingulate Gyrus	brain
10	chrX:64927800-64945800	Weak transcription	Brain Substantia Nigra	brain
11	chrX:64927800-64945800	Weak transcription	HMEC	breast
12	chrX:64927800-64946800	Weak transcription	Brain Anterior Caudate	brain
13	chrX:64927800-64964200	Weak transcription	Fetal Heart	heart
14	chrX:64932000-64946600	Weak transcription	Psoas Muscle	Psoas
15	chrX:64932200-64947600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chrX:64932200-64947800	Weak transcription	Fetal Kidney	kidney
17	chrX:64932200-64949400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chrX:64932400-64948400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chrX:64933400-64950200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chrX:64934200-64946000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chrX:64936200-64946600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chrX:64936400-64946400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chrX:64936400-64947000	Genic enhancers	Primary T cells fromperipheralblood	blood
24	chrX:64936400-64951600	Weak transcription	Fetal Intestine Large	intestine
25	chrX:64936400-64963400	Strong transcription	Dnd41	blood
26	chrX:64936800-64952600	Weak transcription	Rectal Smooth Muscle	rectum
27	chrX:64937400-64947800	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chrX:64937600-64946000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chrX:64937600-64947200	Weak transcription	Fetal Muscle Trunk	muscle
30	chrX:64937600-64947800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chrX:64937800-64947600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chrX:64937800-64949400	Weak transcription	Ovary	ovary
33	chrX:64937800-64949400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chrX:64938000-64946200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chrX:64938000-64949400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chrX:64939200-64947800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chrX:64939400-64945600	Weak transcription	Brain Hippocampus Middle	brain
38	chrX:64939600-64947600	Genic enhancers	Primary B cells from peripheral blood	blood
39	chrX:64939800-64945400	Genic enhancers	Primary monocytes fromperipheralblood	blood
40	chrX:64940000-64945400	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chrX:64940000-64957200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chrX:64940400-64944600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
43	chrX:64940400-64945000	Enhancers	Primary T cells from cord blood	blood
44	chrX:64940800-64949200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chrX:64940800-64962400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chrX:64940800-64964400	Weak transcription	Small Intestine	intestine
47	chrX:64941200-64945000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chrX:64941200-64945000	Weak transcription	Primary hematopoietic stem cells	blood
49	chrX:64941200-64945800	Weak transcription	HSMM	muscle
50	chrX:64941200-64947400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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