The 2.0 version of rSNPBase
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Variant report
Variant
rs12387998
Chromosome Location
chrX:65012833-65012834
allele
C/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
No data
No data
No data
No data
Extended variants information (count: 6 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:5)
rs_ID
r
2
[population]
rs5965003
0.82[YRI][hapmap]
rs5965030
1.00[YRI][hapmap]
rs7058831
0.83[YRI][hapmap]
rs7061281
0.82[YRI][hapmap]
rs7877834
1.00[YRI][hapmap]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
esv3429625
chrX:64787230-65458721
Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site
37 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links