Variant report

No.	Distal block	Cell Line	Cell type
1	chrX:64798779..64801868-chrX:64807911..64810764,3	K562	blood:
2	chrX:64799915..64802126-chrX:65265655..65267387,2	K562	blood:
3	chrX:64799494..64801096-chrX:65238969..65240789,2	K562	blood:

Variant related genes	Relation type
ENSG00000147065	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12395619	1.00[TSI][hapmap]
rs16989666	1.00[MEX][hapmap]
rs2038284	1.00[ASW][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs2038285	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4535877	1.00[TSI][hapmap]
rs5964442	1.00[ASW][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap]
rs5964443	0.91[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5964999	1.00[ASW][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]
rs5965003	1.00[MEX][hapmap]
rs5965004	1.00[MEX][hapmap]
rs5965006	1.00[MEX][hapmap]
rs5965007	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6524991	1.00[MEX][hapmap]
rs6525004	1.00[MEX][hapmap]
rs6525006	1.00[ASW][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs6525007	1.00[ASW][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs6624812	1.00[MEX][hapmap]
rs6653146	1.00[YRI][hapmap]
rs7050592	1.00[ASW][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs7051717	1.00[ASW][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs7061281	1.00[MEX][hapmap]
rs7065069	1.00[TSI][hapmap]
rs926806	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv3409088	chrX:64739187-64876813	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3429625	chrX:64787230-65458721	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64797800-64801800	Weak transcription	K562	blood
2	chrX:64798800-64801600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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