Variant report

Variant	rs6524991
Chromosome Location	chrX:64745441-64745442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrX:64745213-64745484	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:64744036..64746297-chrX:64752886..64754853,2	MCF-7	breast:
2	chrX:64744906..64748287-chrX:64748663..64751422,4	K562	blood:

Variant related genes	Relation type
LAS1L	TF binding region
ENSG00000001497	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12395619	0.91[YRI][hapmap]
rs12397033	1.00[MEX][hapmap]
rs16989666	1.00[MEX][hapmap];0.95[YRI][hapmap]
rs2038284	1.00[MEX][hapmap]
rs2038285	1.00[MEX][hapmap]
rs5964443	1.00[MEX][hapmap]
rs5964981	0.91[YRI][hapmap]
rs5964999	1.00[MEX][hapmap]
rs5965003	1.00[MEX][hapmap]
rs5965004	1.00[MEX][hapmap]
rs6525004	1.00[MEX][hapmap]
rs6624783	1.00[MEX][hapmap];0.95[YRI][hapmap]
rs6624812	1.00[MEX][hapmap]
rs7050592	1.00[MEX][hapmap]
rs7051717	1.00[MEX][hapmap]
rs7064663	0.95[YRI][hapmap]
rs7878024	0.95[YRI][hapmap]
rs7884225	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv3409088	chrX:64739187-64876813	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64725600-64748000	Weak transcription	GM12878-XiMat	blood
2	chrX:64726800-64747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chrX:64727200-64748400	Strong transcription	Dnd41	blood
4	chrX:64727200-64749000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chrX:64727600-64752000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chrX:64728200-64752600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chrX:64728200-64753000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chrX:64728600-64750400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chrX:64729600-64753000	Weak transcription	HUVEC	blood vessel
10	chrX:64730000-64746800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chrX:64730200-64747800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chrX:64730200-64753000	Weak transcription	Right Atrium	heart
13	chrX:64730400-64750400	Strong transcription	Duodenum Mucosa	Duodenum
14	chrX:64731200-64746400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chrX:64731200-64752400	Strong transcription	Liver	Liver
16	chrX:64731200-64752600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chrX:64731400-64745600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chrX:64731400-64746600	Strong transcription	Adipose Nuclei	Adipose
19	chrX:64731400-64751000	Strong transcription	H1 Cell Line	embryonic stem cell
20	chrX:64733200-64753400	Weak transcription	Stomach Mucosa	stomach
21	chrX:64734000-64747000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chrX:64734000-64748200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chrX:64735000-64748800	Weak transcription	Fetal Lung	lung
24	chrX:64735200-64747600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chrX:64737000-64753400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chrX:64737400-64748200	Strong transcription	Fetal Muscle Leg	muscle
27	chrX:64737400-64748400	Strong transcription	Primary T cells fromperipheralblood	blood
28	chrX:64737400-64750400	Strong transcription	Fetal Muscle Trunk	muscle
29	chrX:64737400-64752400	Strong transcription	Placenta	Placenta
30	chrX:64737600-64746800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chrX:64737600-64751000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chrX:64739000-64746200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chrX:64739800-64745800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chrX:64739800-64748000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chrX:64739800-64751600	Strong transcription	A549	lung
36	chrX:64740000-64751600	Strong transcription	Primary B cells from peripheral blood	blood
37	chrX:64740000-64752400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chrX:64740000-64752400	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chrX:64740000-64752400	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chrX:64740200-64746600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chrX:64740200-64746800	Strong transcription	Brain Hippocampus Middle	brain
42	chrX:64740200-64750400	Strong transcription	Thymus	Thymus
43	chrX:64740200-64752200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chrX:64740400-64745600	Strong transcription	Pancreas	Pancrea
45	chrX:64740400-64745800	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chrX:64740400-64746800	Strong transcription	Primary T cells from cord blood	blood
47	chrX:64740400-64747200	Strong transcription	Brain Anterior Caudate	brain
48	chrX:64740400-64750200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chrX:64740400-64750600	Strong transcription	Lung	lung
50	chrX:64740400-64752200	Strong transcription	Hela-S3	cervix

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