Variant report

Variant	rs7884225
Chromosome Location	chrX:64757286-64757287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12395619	0.85[ASW][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs16989666	0.86[YRI][hapmap]
rs5964961	0.81[YRI][hapmap]
rs5964981	1.00[ASW][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs6524991	0.91[YRI][hapmap]
rs7065069	0.92[ASW][hapmap];0.94[MKK][hapmap];0.86[YRI][hapmap]
rs7878024	0.86[YRI][hapmap]
rs959215	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv3409088	chrX:64739187-64876813	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64755200-64761800	Weak transcription	K562	blood
2	chrX:64755400-64757800	Enhancers	Hela-S3	cervix
3	chrX:64757000-64757400	Enhancers	Fetal Heart	heart
4	chrX:64757000-64757800	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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