Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:64709375..64713051-chrX:64713313..64717502,4	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12395545	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs12397033	1.00[TSI][hapmap]
rs16989666	0.86[YRI][hapmap]
rs2038284	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2038285	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs5964442	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs5964443	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs5964961	0.81[YRI][hapmap]
rs5964981	0.85[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs5964989	1.00[GIH][hapmap]
rs5964990	1.00[GIH][hapmap]
rs5964999	1.00[TSI][hapmap]
rs6524979	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6524991	0.91[YRI][hapmap]
rs6624783	0.86[YRI][hapmap]
rs7050592	1.00[TSI][hapmap]
rs7051717	1.00[TSI][hapmap]
rs7064663	0.86[YRI][hapmap]
rs7065069	0.93[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs7878024	0.86[YRI][hapmap]
rs7884225	0.85[ASW][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs959215	1.00[GIH][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64694400-64732000	Weak transcription	Aorta	Aorta
2	chrX:64706800-64713400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chrX:64709600-64714800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chrX:64710200-64713400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: