Variant report

Variant	rs12395545
Chromosome Location	chrX:64711703-64711704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12395619	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs2038284	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs2038285	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5964442	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5964443	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5964981	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5964989	1.00[GIH][hapmap]
rs5964990	1.00[GIH][hapmap]
rs6524979	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs7065069	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs959215	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64694400-64732000	Weak transcription	Aorta	Aorta
2	chrX:64706800-64713400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chrX:64709600-64714800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chrX:64710200-64713400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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