Variant report

Variant	rs5964981
Chromosome Location	chrX:64727553-64727554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:62978869..62981119-chrX:64727171..64729692,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12395545	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs12395619	0.85[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs16989666	0.86[YRI][hapmap]
rs2038284	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs2038285	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5964442	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5964443	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5964961	0.81[YRI][hapmap]
rs5964989	1.00[GIH][hapmap]
rs5964990	1.00[GIH][hapmap]
rs6524979	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs6524991	0.91[YRI][hapmap]
rs6624783	0.86[YRI][hapmap]
rs7064663	0.86[YRI][hapmap]
rs7065069	0.92[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap];0.86[YRI][hapmap]
rs7878024	0.86[YRI][hapmap]
rs7884225	1.00[ASW][hapmap];0.97[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs959215	1.00[GIH][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64694400-64732000	Weak transcription	Aorta	Aorta
2	chrX:64717400-64728600	Weak transcription	Primary T cells from cord blood	blood
3	chrX:64717400-64731200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chrX:64718800-64731200	Weak transcription	Thymus	Thymus
5	chrX:64719800-64731800	Weak transcription	Brain Hippocampus Middle	brain
6	chrX:64720000-64741200	Weak transcription	Fetal Kidney	kidney
7	chrX:64720400-64735400	Weak transcription	Brain Angular Gyrus	brain
8	chrX:64721200-64733800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chrX:64721200-64736200	Weak transcription	Brain Substantia Nigra	brain
10	chrX:64721400-64741800	Weak transcription	Colonic Mucosa	Colon
11	chrX:64722000-64728400	Weak transcription	Fetal Intestine Large	intestine
12	chrX:64722000-64740400	Weak transcription	Pancreas	Pancrea
13	chrX:64722200-64731400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chrX:64722600-64727800	Weak transcription	Fetal Stomach	stomach
15	chrX:64722800-64732000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chrX:64722800-64734400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chrX:64723000-64728600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chrX:64723000-64731400	Weak transcription	Left Ventricle	heart
19	chrX:64723200-64728200	Weak transcription	Fetal Intestine Small	intestine
20	chrX:64723400-64727600	Weak transcription	Primary B cells from peripheral blood	blood
21	chrX:64723400-64728200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chrX:64723400-64729000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chrX:64723400-64732200	Weak transcription	Right Ventricle	heart
24	chrX:64723400-64741600	Weak transcription	Primary hematopoietic stem cells	blood
25	chrX:64723800-64732000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chrX:64723800-64736200	Weak transcription	K562	blood
27	chrX:64724000-64729000	Weak transcription	Duodenum Mucosa	Duodenum
28	chrX:64724000-64740600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chrX:64724200-64729000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chrX:64724200-64732800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chrX:64724400-64731200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chrX:64724600-64731600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chrX:64724800-64728400	Weak transcription	Placenta	Placenta
34	chrX:64725000-64737400	Weak transcription	NH-A	brain
35	chrX:64725200-64728200	Weak transcription	Stomach Smooth Muscle	stomach
36	chrX:64725200-64728400	Weak transcription	Fetal Thymus	thymus
37	chrX:64725600-64728200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chrX:64725600-64728400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chrX:64725600-64728400	Weak transcription	Fetal Muscle Leg	muscle
40	chrX:64725600-64730200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chrX:64725600-64731800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chrX:64725600-64734800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chrX:64725600-64748000	Weak transcription	GM12878-XiMat	blood
44	chrX:64725800-64740600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chrX:64726000-64727600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chrX:64726000-64728200	Weak transcription	Liver	Liver
47	chrX:64726200-64727800	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chrX:64726200-64727800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chrX:64726200-64729000	Weak transcription	HUVEC	blood vessel
50	chrX:64726200-64731200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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