Variant report

Variant	rs7065069
Chromosome Location	chrX:64688876-64688877
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12395545	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs12395619	0.93[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs12397033	1.00[TSI][hapmap]
rs2038284	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2038285	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs5964442	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs5964443	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs5964961	0.95[YRI][hapmap]
rs5964981	0.92[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap];0.86[YRI][hapmap]
rs5964989	1.00[GIH][hapmap]
rs5964990	1.00[GIH][hapmap]
rs6524979	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7050592	1.00[TSI][hapmap]
rs7884225	0.92[ASW][hapmap];0.94[MKK][hapmap];0.86[YRI][hapmap]
rs959215	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv3432596	chrX:64670980-64705458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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