Variant report

Variant	rs6653146
Chromosome Location	chrX:64737713-64737714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:64737530..64740065-chrX:64740379..64742916,2	K562	blood:
2	chrX:64736783..64738921-chrX:64743226..64745220,2	K562	blood:
3	chrX:64737462..64739978-chrX:64752931..64755131,2	K562	blood:
4	chrX:64735263..64737884-chrX:64741780..64743529,2	K562	blood:
5	chrX:64734797..64737860-chrX:64738287..64740604,3	K562	blood:

Variant related genes	Relation type
ENSG00000001497	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12397033	1.00[YRI][hapmap]
rs2038285	1.00[YRI][hapmap]
rs5964443	1.00[YRI][hapmap]
rs926806	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64720000-64741200	Weak transcription	Fetal Kidney	kidney
2	chrX:64721400-64741800	Weak transcription	Colonic Mucosa	Colon
3	chrX:64722000-64740400	Weak transcription	Pancreas	Pancrea
4	chrX:64723400-64741600	Weak transcription	Primary hematopoietic stem cells	blood
5	chrX:64724000-64740600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chrX:64725600-64748000	Weak transcription	GM12878-XiMat	blood
7	chrX:64725800-64740600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chrX:64726800-64747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chrX:64727200-64740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chrX:64727200-64741800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chrX:64727200-64748400	Strong transcription	Dnd41	blood
12	chrX:64727200-64749000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chrX:64727600-64752000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chrX:64727800-64740600	Weak transcription	HSMM	muscle
15	chrX:64728000-64740600	Weak transcription	Primary B cells from cord blood	blood
16	chrX:64728000-64740800	Weak transcription	HSMMtube	muscle
17	chrX:64728200-64752600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chrX:64728200-64753000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chrX:64728600-64740400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chrX:64728600-64750400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chrX:64729000-64739000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chrX:64729000-64740800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chrX:64729600-64753000	Weak transcription	HUVEC	blood vessel
24	chrX:64730000-64746800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chrX:64730200-64739000	Strong transcription	A549	lung
26	chrX:64730200-64740400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chrX:64730200-64742400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chrX:64730200-64747800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chrX:64730200-64753000	Weak transcription	Right Atrium	heart
30	chrX:64730400-64750400	Strong transcription	Duodenum Mucosa	Duodenum
31	chrX:64730600-64738200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chrX:64730800-64740000	Weak transcription	Osteobl	bone
33	chrX:64731200-64737800	Strong transcription	Thymus	Thymus
34	chrX:64731200-64738600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chrX:64731200-64738600	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chrX:64731200-64739000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chrX:64731200-64741000	Weak transcription	NHLF	lung
38	chrX:64731200-64742800	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chrX:64731200-64745400	Strong transcription	Spleen	Spleen
40	chrX:64731200-64746400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chrX:64731200-64752400	Strong transcription	Liver	Liver
42	chrX:64731200-64752600	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chrX:64731400-64741200	Weak transcription	Colon Smooth Muscle	Colon
44	chrX:64731400-64741200	Weak transcription	Psoas Muscle	Psoas
45	chrX:64731400-64745600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
46	chrX:64731400-64746600	Strong transcription	Adipose Nuclei	Adipose
47	chrX:64731400-64751000	Strong transcription	H1 Cell Line	embryonic stem cell
48	chrX:64731800-64742200	Weak transcription	Rectal Smooth Muscle	rectum
49	chrX:64732000-64739400	Strong transcription	Fetal Intestine Large	intestine
50	chrX:64732000-64745200	Strong transcription	Fetal Intestine Small	intestine

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