Variant report

Variant	rs12395548
Chromosome Location	chrX:65582886-65582887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1011526	0.83[GIH][hapmap];0.93[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs1068536	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs1068537	1.00[ASW][hapmap];0.85[CEU][hapmap];0.91[GIH][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs1068538	0.85[CEU][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap]
rs1090752	0.85[CEU][hapmap]
rs1090842	0.85[CEU][hapmap]
rs1091486	0.91[GIH][hapmap];0.81[TSI][hapmap]
rs1264212	0.83[GIH][hapmap]
rs1264216	0.91[GIH][hapmap];0.82[TSI][hapmap]
rs1415297	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs1456803	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs1456804	1.00[ASW][hapmap];0.85[CEU][hapmap];0.91[GIH][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs1456806	1.00[ASW][hapmap];0.85[CEU][hapmap];0.91[GIH][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs1989028	1.00[YRI][hapmap]
rs2054179	0.85[CEU][hapmap]
rs2198868	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs2198869	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs2206203	1.00[ASW][hapmap];0.83[GIH][hapmap];0.91[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs4827365	0.85[CEU][hapmap]
rs4827476	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs5918594	0.83[ASW][hapmap];0.85[CEU][hapmap];0.91[GIH][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs5919024	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs5919069	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5964500	1.00[ASW][hapmap];0.83[GIH][hapmap];0.91[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs5965105	1.00[ASW][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs5965106	0.83[GIH][hapmap]
rs651494	0.85[CEU][hapmap]
rs6525080	0.85[CEU][hapmap]
rs6624875	0.83[GIH][hapmap]
rs6624953	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs699863	1.00[ASW][hapmap];0.85[CEU][hapmap];0.83[GIH][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs7054364	0.83[GIH][hapmap]
rs7062799	0.83[GIH][hapmap]
rs707298	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs707302	1.00[ASW][hapmap];0.85[CEU][hapmap];0.91[GIH][hapmap];0.91[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs708966	1.00[ASW][hapmap];0.85[CEU][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs708968	0.85[CEU][hapmap];0.91[GIH][hapmap];0.86[TSI][hapmap]
rs708969	0.85[CEU][hapmap];0.83[GIH][hapmap];0.86[TSI][hapmap]
rs7891437	1.00[ASW][hapmap];0.83[GIH][hapmap];0.91[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs806538	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs806607	1.00[ASW][hapmap];0.91[GIH][hapmap];0.87[MKK][hapmap];0.86[TSI][hapmap]
rs806608	0.91[GIH][hapmap];0.81[TSI][hapmap]
rs806610	0.91[GIH][hapmap];0.81[TSI][hapmap]
rs809363	0.91[GIH][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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