Variant report
| Variant | rs1415297 |
|---|---|
| Chromosome Location | chrX:65582278-65582279 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs1011526 | 0.83[GIH][hapmap] |
| rs1068536 | 0.85[CEU][hapmap] |
| rs1068537 | 0.85[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap] |
| rs1068538 | 0.85[CEU][hapmap];0.91[GIH][hapmap];0.86[TSI][hapmap] |
| rs1090752 | 0.85[CEU][hapmap] |
| rs1090842 | 0.85[CEU][hapmap] |
| rs1091486 | 0.91[GIH][hapmap];0.86[TSI][hapmap] |
| rs12395548 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap] |
| rs1264212 | 0.83[GIH][hapmap];0.82[TSI][hapmap] |
| rs1264216 | 0.91[GIH][hapmap];0.86[TSI][hapmap] |
| rs1456803 | 0.85[CEU][hapmap] |
| rs1456804 | 0.85[CEU][hapmap];0.91[GIH][hapmap];0.86[TSI][hapmap] |
| rs1456806 | 0.85[CEU][hapmap];0.91[GIH][hapmap];0.86[TSI][hapmap] |
| rs2054179 | 0.85[CEU][hapmap] |
| rs2198868 | 0.85[CEU][hapmap] |
| rs2198869 | 0.85[CEU][hapmap] |
| rs2206203 | 0.83[GIH][hapmap] |
| rs4827365 | 0.85[CEU][hapmap] |
| rs4827476 | 0.85[CEU][hapmap] |
| rs5918594 | 0.85[CEU][hapmap];0.91[GIH][hapmap];0.86[TSI][hapmap] |
| rs5919024 | 0.84[CEU][hapmap] |
| rs5919069 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap] |
| rs5964500 | 0.83[GIH][hapmap] |
| rs5965106 | 0.83[GIH][hapmap] |
| rs5965110 | 0.81[TSI][hapmap] |
| rs651494 | 0.85[CEU][hapmap] |
| rs6525080 | 0.85[CEU][hapmap];0.90[YRI][hapmap] |
| rs6624875 | 0.83[GIH][hapmap];0.82[TSI][hapmap] |
| rs6624953 | 0.85[CEU][hapmap] |
| rs699863 | 0.85[CEU][hapmap];0.83[GIH][hapmap];0.86[TSI][hapmap] |
| rs7054364 | 0.83[GIH][hapmap];0.82[TSI][hapmap] |
| rs7062799 | 0.83[GIH][hapmap] |
| rs707298 | 0.85[CEU][hapmap] |
| rs707302 | 0.85[CEU][hapmap];0.91[GIH][hapmap];0.86[TSI][hapmap] |
| rs708966 | 0.85[CEU][hapmap];0.86[TSI][hapmap] |
| rs708968 | 0.85[CEU][hapmap];0.91[GIH][hapmap];0.90[TSI][hapmap] |
| rs708969 | 0.85[CEU][hapmap];0.83[GIH][hapmap];0.90[TSI][hapmap] |
| rs7891437 | 0.83[GIH][hapmap] |
| rs806538 | 0.85[CEU][hapmap] |
| rs806607 | 0.91[GIH][hapmap];0.82[TSI][hapmap] |
| rs806608 | 0.91[GIH][hapmap];0.86[TSI][hapmap] |
| rs806610 | 0.91[GIH][hapmap];0.86[TSI][hapmap] |
| rs809363 | 0.91[GIH][hapmap];0.86[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv995042 | chrX:65121634-65953299 | Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 40 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
