Variant report

Variant	rs4827476
Chromosome Location	chrX:65656981-65656982
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1068536	1.00[YRI][hapmap]
rs1068537	1.00[YRI][hapmap]
rs12395548	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs1415297	0.85[CEU][hapmap]
rs1456803	1.00[YRI][hapmap]
rs1456804	1.00[YRI][hapmap]
rs1456806	1.00[YRI][hapmap]
rs1825564	0.85[CEU][hapmap]
rs2198868	1.00[YRI][hapmap]
rs2198869	1.00[YRI][hapmap]
rs5918594	1.00[YRI][hapmap]
rs5919024	1.00[YRI][hapmap]
rs5919069	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs6525080	1.00[CEU][hapmap]
rs6624953	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs707298	1.00[YRI][hapmap]
rs707302	1.00[YRI][hapmap]
rs806538	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995042	chrX:65121634-65953299	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	nsv916917	chrX:65628203-65966658	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv498092	chrX:65628203-66170369	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:65656800-65658000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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